Protocol for vision transformer-based evaluation of drug potency using images processed by an optimized Sobel operator

使用经过优化的 Sobel 算子处理的图像进行基于视觉变换器的药物效力评估协议

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作者:Yongheng Wang, Weidi Zhang, Yi Wu, Chuyuan Qu, Hongru Hu, Teresa Lee, Siyu Lin, Jiawei Zhang, Kit S Lam, Aijun Wang

Abstract

Conventional approaches for screening anticancer drugs rely on chemical reactions, which are time consuming, labor intensive, and costly. Here, we present a protocol for label-free and high-throughput assessment of drug efficacy using a vision transformer and a Conv2D. We describe the steps for cell culture, drug treatment, data collection, and preprocessing. We then detail the building of deep learning models and their use to predict drug potency. This protocol can be adapted for screening chemicals that affect the density or morphological features of cells. For complete details on the use and execution of this protocol, please refer to Wang et al.1.

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