Single-cell chromatin accessibility landscape identifies tissue repair program in human regulatory T cells

单细胞染色质可及性图谱揭示了人类调节性T细胞中的组织修复程序

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作者:Michael Delacher ,Malte Simon ,Lieke Sanderink ,Agnes Hotz-Wagenblatt ,Marina Wuttke ,Kathrin Schambeck ,Lisa Schmidleithner ,Sebastian Bittner ,Asmita Pant ,Uwe Ritter ,Thomas Hehlgans ,Dania Riegel ,Verena Schneider ,Florian Kai Groeber-Becker ,Andreas Eigenberger ,Claudia Gebhard ,Nicholas Strieder ,Alexander Fischer ,Michael Rehli ,Petra Hoffmann ,Matthias Edinger ,Till Strowig ,Jochen Huehn ,Christian Schmidl ,Jens M Werner ,Lukas Prantl ,Benedikt Brors ,Charles D Imbusch ,Markus Feuerer

Abstract

Murine regulatory T (Treg) cells in tissues promote tissue homeostasis and regeneration. We sought to identify features that characterize human Treg cells with these functions in healthy tissues. Single-cell chromatin accessibility profiles of murine and human tissue Treg cells defined a conserved, microbiota-independent tissue-repair Treg signature with a prevailing footprint of the transcription factor BATF. This signature, combined with gene expression profiling and TCR fate mapping, identified a population of tissue-like Treg cells in human peripheral blood that expressed BATF, chemokine receptor CCR8 and HLA-DR. Human BATF+CCR8+ Treg cells from normal skin and adipose tissue shared features with nonlymphoid T follicular helper-like (Tfh-like) cells, and induction of a Tfh-like differentiation program in naive human Treg cells partially recapitulated tissue Treg regenerative characteristics, including wound healing potential. Human BATF+CCR8+ Treg cells from healthy tissue share features with tumor-resident Treg cells, highlighting the importance of understanding the context-specific functions of these cells.

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