Transcriptome and proteome characterization of surface ectoderm cells differentiated from human iPSCs

人类 iPSC 分化的表面外胚层细胞的转录组和蛋白质组表征

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作者:Ying Qu, Bo Zhou, Wei Yang, Bingchen Han, Yi Yu-Rice, Bowen Gao, Jeffery Johnson, Clive N Svendsen, Michael R Freeman, Armando E Giuliano, Dhruv Sareen, Xiaojiang Cui

Abstract

Surface ectoderm (SE) cells give rise to structures including the epidermis and ectodermal associated appendages such as hair, eye, and the mammary gland. In this study, we validate a protocol that utilizes BMP4 and the γ-secretase inhibitor DAPT to induce SE differentiation from human induced pluripotent stem cells (hiPSCs). hiPSC-differentiated SE cells expressed markers suggesting their commitment to the SE lineage. Computational analyses using integrated quantitative transcriptomic and proteomic profiling reveal that TGFβ superfamily signaling pathways are preferentially activated in SE cells compared with hiPSCs. SE differentiation can be enhanced by selectively blocking TGFβ-RI signaling. We also show that SE cells and neural ectoderm cells possess distinct gene expression patterns and signaling networks as indicated by functional Ingenuity Pathway Analysis. Our findings advance current understanding of early human SE cell development and pave the way for modeling of SE-derived tissue development, studying disease pathogenesis, and development of regenerative medicine approaches.

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