Proteogenomic Analysis of Surgically Resected Lung Adenocarcinoma

手术切除的肺腺癌的蛋白质组学分析

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作者:Michael F Sharpnack, Nilini Ranbaduge, Arunima Srivastava, Ferdinando Cerciello, Simona G Codreanu, Daniel C Liebler, Celine Mascaux, Wayne O Miles, Robert Morris, Jason E McDermott, James L Sharpnack, Joseph Amann, Christopher A Maher, Raghu Machiraju, Vicki H Wysocki, Ramaswami Govindan, Parag Mal

Conclusions

Our results suggest that mRNA and protein data possess independent biological and clinical importance, which can be leveraged to create higher-powered expression biomarkers.

Methods

RNA sequencing and liquid chromatography/liquid chromatography-mass spectrometry proteomics data were generated from 51 surgically resected non-small cell lung tumors with known recurrence status.

Results

We present a rationale and framework for the incorporation of high-content RNA and protein measurements into integrative biomarkers and show the potential of this approach for predicting risk of recurrence in a group of lung adenocarcinomas. In addition, we characterize the relationship between mRNA and protein measurements in lung adenocarcinoma and show that it is outcome specific. Conclusions: Our results suggest that mRNA and protein data possess independent biological and clinical importance, which can be leveraged to create higher-powered expression biomarkers.

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