Memory B cell repertoire for recognition of evolving SARS-CoV-2 spike

记忆B细胞库用于识别不断演变的SARS-CoV-2刺突蛋白

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作者:Pei Tong ,Avneesh Gautam ,Ian W Windsor ,Meghan Travers ,Yuezhou Chen ,Nicholas Garcia ,Noah B Whiteman ,Lindsay G A McKay ,Nadia Storm ,Lauren E Malsick ,Anna N Honko ,Felipe J N Lelis ,Shaghayegh Habibi ,Simon Jenni ,Yongfei Cai ,Linda J Rennick ,W Paul Duprex ,Kevin R McCarthy ,Christy L Lavine ,Teng Zuo ,Junrui Lin ,Adam Zuiani ,Jared Feldman ,Elizabeth A MacDonald ,Blake M Hauser ,Anthony Griffths ,Michael S Seaman ,Aaron G Schmidt ,Bing Chen ,Donna Neuberg ,Goran Bajic ,Stephen C Harrison ,Duane R Wesemann

Abstract

Memory B cell reserves can generate protective antibodies against repeated SARS-CoV-2 infections, but with unknown reach from original infection to antigenically drifted variants. We charted memory B cell receptor-encoded antibodies from 19 COVID-19 convalescent subjects against SARS-CoV-2 spike (S) and found seven major antibody competition groups against epitopes recurrently targeted across individuals. Inclusion of published and newly determined structures of antibody-S complexes identified corresponding epitopic regions. Group assignment correlated with cross-CoV-reactivity breadth, neutralization potency, and convergent antibody signatures. Although emerging SARS-CoV-2 variants of concern escaped binding by many members of the groups associated with the most potent neutralizing activity, some antibodies in each of those groups retained affinity-suggesting that otherwise redundant components of a primary immune response are important for durable protection from evolving pathogens. Our results furnish a global atlas of S-specific memory B cell repertoires and illustrate properties driving viral escape and conferring robustness against emerging variants.

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