Abstract
In the aquatic genus Stuckenia, the wide geographic range of S. pectinata and S. filiformis make them suited for examination of topographic and climatic effects on plant evolution. Using nuclear ITS sequence and ten chloroplast sequences, we conducted comparative phylogeographical analyses to investigate their distribution regions and hybrid zones in China, and compare their phylogeographical patterns and demographical histories. These two species were allopatric in China. S. filiformis occurred only on the Qinghai-Tibet Plateau (QTP), whereas S. pectinata occupied a wide range of habitats. These two species formed hybrid zones on the northeastern edge of QTP. Most of the genetic variance of S. filiformis was between the southern and eastern groups on the QTP, showing a significant phylogeographic structure. The geographical isolations caused by the Nyenchen Tanglha Mountains and the Tanggula Mountains promoted intraspecific diversification of alpine plants on the QTP. This study revealed the lack of phylogeographic structure in S. pectinata, due to the continued gene flow among its distribution regions. The ecological niche modeling showed that the distribution ranges of these two herbaceous species did not contract too much during the glacial period.