An automated method to discover true events and classification of intracellular Ca2+ profiles for endothelium in situ injury assay

用于内皮原位损伤试验的发现真实事件和细胞内 Ca2+ 分布分类的自动化方法

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作者:Marcial Sánchez-Tecuatl, Francesco Moccia, Jorge F Martínez-Carballido, Roberto Berra-Romani

Discussion

Results indicate that our approach ensures sturdiness to experimental protocol maneuvers, besides it is effective, simple, and configurable for different studies that use unidimensional time dependent signals as data. Furthermore, our approach would also be effective to analyze the ICPs generated by other cell types, other dyes, chemical stimulation or even signals recorded at higher frequency.

Methods

Herein, we present an approach to classify ICPs that consists in three stages: 1) identification of Ca2+ candidate events through thresholding of a feature termed left-prominence; 2) identification of non-true events, known as artifacts; and 3) ICP classification based upon event temporal location.

Results

The performance assessment of true-events identification showed competitive sensitivity = [0.9995, 0.9831], specificity = [0.9946, 0.7818] and accuracy = [0.9978, 0.9579] improvements of 2x and 14x, respectively, compared with other methods. The ICP classifier enhanced by artifact detection showed 0.9252 average accuracy with the ground-truth sets provided for validation.

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