Nucleotide Exchange Mechanism Involving Angle-Dependent Rate Constants Extracted from F1-ATPase Single-Molecule Rotation Trajectories

从F1-ATPase单分子旋转轨迹中提取的角度依赖性速率常数所涉及的核苷酸交换机制

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Abstract

Evidence has been mounting that in the rotational cycle of F1-ATPase there is a concerted ATP binding and ADP release that yields a million-fold acceleration in the rate of the product ADP release. We developed a theory of reaction kinetics to investigate the relationship between the concerted nucleotide exchange and previous single-molecule forced rotation data from Adachi, K. Nat. Commun. 2012, 3, 1022. We extracted from these data angle-dependent rate constants for nucleotide binding and release. The rate constants were then used in a unified kinetic scheme, also consistent with other single-molecule and ensemble experiments, to obtain analytical equations for nucleotide occupancy change events from nano- to millimolar ATP concentrations. A theory-experiment comparison revealed novel evidence about the concerted mechanism: it is determined by correlated conformational changes in the F1-ATPase ring, and its kinetic signature is a unified angle-dependent function of the nucleotide binding and release rate constants, which is independent of ATP concentration.

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