An enzyme-activated loop primer probe LAMP method based on a new SNP site in the group_17537 gene for rapid on-site detection of Salmonella Pullorum

一种基于 group_17537 基因中新 SNP 位点的酶激活环引物探针 LAMP 方法,用于快速现场检测鸡白痢沙门氏菌

阅读:1

Abstract

Pullorum disease (PD) is a widespread disease that causes significant economic losses within the poultry industry of developing countries. An effective strategy for its prevention and control involves the implementation of decontamination procedures utilizing highly specific on-site detection techniques. In this study, a single-nucleotide polymorphism (SNP) site within the group_17537 gene of Salmonella enterica serovar Gallinarum biovars Pullorum (S. Pullorum) was found by using bioinformatics tools. The prevalence of this SNP among 165 strains of S. Pullorum was determined to exceed 96.3 %. The SNP exhibited a specificity rate greater than 99.9 %, with only 0.08 % detected among 2490 non-target Salmonella strains. It can be concluded that this SNP can be employed to distinguish S. Pullorum from other serotypes of Salmonella, specifically Salmonella enterica serovar Enteritidis (S. Enteritidis) and Salmonella enterica serovar Gallinarum biovars Gallinarum (S. Gallinarum). Additionally, an enzyme-activated loop primer probe LAMP (EALP-LAMP) was developed based on this SNP site for the detection of S. Pullorum. This method exhibited excellent specificity and reproducibility, achieving limit of detection of 53.5 copies/µL with plasmid DNA and 0.2 pg/µL with genomic DNA. Moreover, in clinical applications involving 190 chick embryo samples from poultry farms, 24 samples identified as S. Pullorum positive, aligning with results obtained through traditional isolation and quantitative real-time PCR (qPCR) methods. These fingdings highlight the significant potential of this method, which offers accurate, rapid, on-site and visual detection of S. Pullorum.

特别声明

1、本页面内容包含部分的内容是基于公开信息的合理引用;引用内容仅为补充信息,不代表本站立场。

2、若认为本页面引用内容涉及侵权,请及时与本站联系,我们将第一时间处理。

3、其他媒体/个人如需使用本页面原创内容,需注明“来源:[生知库]”并获得授权;使用引用内容的,需自行联系原作者获得许可。

4、投稿及合作请联系:info@biocloudy.com。