Protocol to analyze circulating small non-coding RNAs by high-throughput RNA sequencing from human plasma samples

通过高通量 RNA 测序分析人类血浆样本中的循环小非编码 RNA 的方案

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作者:Giuseppina E Grieco, Guido Sebastiani, Daniela Fignani, Noemi Brusco, Laura Nigi, Caterina Formichi, Giada Licata, Marco Bruttini, Romina D'Aurizio, Chantal Mathieu, Conny Gysemans, Francesco Dotta

Abstract

The identification and validation of circulating small non-coding RNA (sncRNA) as biomarkers for disease diagnosis, staging, and response to novel therapies is still a compelling challenge. Pre-analytical variables, such as storage temperature or blood hemolysis, and different analytical approaches affect sncRNA stability, detection, and expression, resulting in discrepancies among studies. Here, we report a systematic standardized protocol to reproducibly analyze circulating sncRNAs, employing high-throughput sncRNA sequencing and qRT-PCR validation, from 200 μL of human plasma samples. For details on the use and execution of this protocol, please refer to Ventriglia et al. (2020), Sebastiani et al. (2017), and Dotta et al. (2018).

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