Estimating Polar Bear (Ursus maritimus) Age Based on an Epigenetic DNA Methylation Clock

基于表观遗传DNA甲基化时钟估算北极熊(Ursus maritimus)年龄

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Abstract

Knowledge of animal age is essential to wildlife managers for obtaining meaningful and accurate insights into demographic parameters. A common approach to aging wildlife, including bears (Ursus spp.), has been extracting a tooth during physical capture and counting the cementum annuli. Limitations to tooth-based aging include questionable accuracy and differing results based on the observer and laboratory. DNA methylation-based epigenetic aging clocks have been developed for many species but not yet for polar bears (Ursus maritimus). We generated DNA methylation data from whole blood samples (n = 109) obtained during live capture operations from polar bears of known age in the Chukchi Sea and southern Beaufort Sea subpopulations. We used these samples to calibrate a species-specific epigenetic clock to estimate polar bear chronological age from DNA methylation (DNAm) age. The final polar bear clock was highly accurate (r = 0.97) with a median absolute error of approximately 9 months. We applied the polar bear clock to 74 blood samples from live-captured polar bears with a cementum annuli-estimated age. Predicted age estimates for these bears ranged from 1.43 to 18.63 years compared to the estimated tooth age range of 3.23-25.27. These epigenetic clocks can be used for polar bear research and management where accurate estimates of age are needed for estimating demographic parameters.

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