Chromosome-scale assembly of the yellow mealworm genome

黄粉虫基因组的染色体规模组装

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作者:Evangelia Eleftheriou, Jean-Marc Aury, Benoît Vacherie, Benjamin Istace, Caroline Belser, Benjamin Noel, Yannick Moret, Thierry Rigaud, Fabrice Berro, Sona Gasparian, Karine Labadie-Bretheau, Thomas Lefebvre, Mohammed-Amin Madoui

Background

The yellow mealworm beetle, Tenebrio molitor, is a promising alternative protein source for animal and human nutrition and its farming involves relatively low environmental costs. For these reasons, its industrial scale production started this century. However, to optimize and breed sustainable new T. molitor lines, the access to its genome remains essential.

Conclusions

The present genome will greatly help fundamental and applied research such as genetic breeding and will contribute to the sustainable production of the yellow mealworm.

Methods

By combining Oxford Nanopore and Illumina Hi-C data, we constructed a high-quality chromosome-scale assembly of T. molitor. Then, we combined RNA-seq data and available coleoptera proteomes for gene prediction with GMOVE.

Results

We produced a high-quality genome with a N50 = 21.9Mb with a completeness of 99.5% and predicted 21,435 genes with a median size of 1,780 bp. Gene orthology between T. molitor and Tribolium castaneum showed a highly conserved synteny between the two coleoptera and paralogs search revealed an expansion of histones in the T. molitor genome. Conclusions: The present genome will greatly help fundamental and applied research such as genetic breeding and will contribute to the sustainable production of the yellow mealworm.

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