Structural basis for receptor binding and broader interspecies receptor recognition of currently circulating Omicron sub-variants

目前流行的 Omicron 亚变体的受体结合和更广泛的跨物种受体识别的结构基础

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作者:Zhennan Zhao #, Yufeng Xie #, Bin Bai #, Chunliang Luo #, Jingya Zhou #, Weiwei Li #, Yumin Meng, Linjie Li, Dedong Li, Xiaomei Li, Xiaoxiong Li, Xiaoyun Wang, Junqing Sun, Zepeng Xu, Yeping Sun, Wei Zhang, Zheng Fan, Xin Zhao, Linhuan Wu, Juncai Ma, Odel Y Li, Guijun Shang, Yan Chai, Kefang Liu, Pe

Abstract

Multiple SARS-CoV-2 Omicron sub-variants, such as BA.2, BA.2.12.1, BA.4, and BA.5, emerge one after another. BA.5 has become the dominant strain worldwide. Additionally, BA.2.75 is significantly increasing in some countries. Exploring their receptor binding and interspecies transmission risk is urgently needed. Herein, we examine the binding capacities of human and other 28 animal ACE2 orthologs covering nine orders towards S proteins of these sub-variants. The binding affinities between hACE2 and these sub-variants remain in the range as that of previous variants of concerns (VOCs) or interests (VOIs). Notably, R493Q reverse mutation enhances the bindings towards ACE2s from humans and many animals closely related to human life, suggesting an increased risk of cross-species transmission. Structures of S/hACE2 or RBD/hACE2 complexes for these sub-variants and BA.2 S binding to ACE2 of mouse, rat or golden hamster are determined to reveal the molecular basis for receptor binding and broader interspecies recognition.

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