Unraveling the dataset transcriptomic response of Hydrangea macrophylla stem to mechanical stimulation: De novo assembly and functional annotation

解析绣球花茎对机械刺激的转录组响应数据集:从头组装和功能注释

阅读:1

Abstract

A crucial attribute of potted ornamental plants is compactness characterized by well branched plants with rather short stems bearing numerous flowers. To gain plant compactness, producers use plant growth regulators (PGRs), in particular growth retardants during culture. However, due to their negative environmental impacts, growth retardants are progressively withdrawn from the market. As a response, eco-friendly alternative methods to chemicals need to be developed. One method consists in mimicking mechanical stimulation (MS) imposed by wind on plants which causes reduction in stem elongation, an increase in stem diameter and an increase in branching, all contributing to plant compactness. So far, few plant species were studied under MS and little is known on molecular response mechanisms to MS. This first transcriptomic data after MS in Hydrangea macrophylla will contribute unravelling how plants respond to mechanical stimuli. RNAseq data were obtained from total mRNA of stems collected 15 min before MS and 1, 3, 24 and 72 h after MS treatment. RNA from non-MS treated plants were used as control. MS treatment consisted in 12 consecutive bendings (i.e. 6 forth and 6 back) applied at 9 a.m. during 1 h and for a single day. From RNAseq data a de novo assembly of the transcriptome was produced and 78,398 transcripts functionally annotated. These transcriptomic data also contribute to a better knowledge of how outdoor crop respond to the increasing frequency of strong harmful winds under climate change.

特别声明

1、本页面内容包含部分的内容是基于公开信息的合理引用;引用内容仅为补充信息,不代表本站立场。

2、若认为本页面引用内容涉及侵权,请及时与本站联系,我们将第一时间处理。

3、其他媒体/个人如需使用本页面原创内容,需注明“来源:[生知库]”并获得授权;使用引用内容的,需自行联系原作者获得许可。

4、投稿及合作请联系:info@biocloudy.com。