Structural characterization of two prototypical repressors of SorC family reveals tetrameric assemblies on DNA and mechanism of function

SorC 家族两种原型阻遏物的结构表征揭示了 DNA 上的四聚体组装及其功能机制

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作者:Markéta Šoltysová, Jana Škerlová, Petr Pachl, Karel Škubník, Milan Fábry, Irena Sieglová, Martina Farolfi, Irina Grishkovskaya, Michal Babiak, Jiří Nováček, Libor Krásný, Pavlína Řezáčová

Abstract

The SorC family of transcriptional regulators plays a crucial role in controlling the carbohydrate metabolism and quorum sensing. We employed an integrative approach combining X-ray crystallography and cryo-electron microscopy to investigate architecture and functional mechanism of two prototypical representatives of two sub-classes of the SorC family: DeoR and CggR from Bacillus subtilis. Despite possessing distinct DNA-binding domains, both proteins form similar tetrameric assemblies when bound to their respective DNA operators. Structural analysis elucidates the process by which the CggR-regulated gapA operon is derepressed through the action of two effectors: fructose-1,6-bisphosphate and newly confirmed dihydroxyacetone phosphate. Our findings provide the first comprehensive understanding of the DNA binding mechanism of the SorC-family proteins, shedding new light on their functional characteristics.

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