An integrative multi-omics approach to characterize interactions between tuberculosis and diabetes mellitus

采用综合多组学方法来表征结核病和糖尿病之间的相互作用

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作者:Caian L Vinhaes, Eduardo R Fukutani, Gabriel C Santana, María B Arriaga, Beatriz Barreto-Duarte, Mariana Araújo-Pereira, Mateus Maggitti-Bezerril, Alice M S Andrade, Marina C Figueiredo, Ginger L Milne, Valeria C Rolla, Afrânio L Kristki, Marcelo Cordeiro-Santos, Timothy R Sterling, Bruno B Andrade,

Abstract

Tuberculosis-diabetes mellitus (TB-DM) is linked to a distinct inflammatory profile, which can be assessed using multi-omics analyses. Here, a machine learning algorithm was applied to multi-platform data, including cytokines and gene expression in peripheral blood and eicosanoids in urine, in a Brazilian multi-center TB cohort. There were four clinical groups: TB-DM(n = 24), TB only(n = 28), DM(HbA1c ≥ 6.5%) only(n = 11), and a control group of close TB contacts who did not have TB or DM(n = 13). After cross-validation, baseline expression or abundance of MMP-28, LTE-4, 11-dTxB2, PGDM, FBXO6, SECTM1, and LINCO2009 differentiated the four patient groups. A distinct multi-omic-derived, dimensionally reduced, signature was associated with TB, regardless of glycemic status. SECTM1 and FBXO6 mRNA levels were positively correlated with sputum acid-fast bacilli grade in TB-DM. Values of the biomarkers decreased during the course of anti-TB therapy. Our study identified several markers associated with the pathophysiology of TB-DM that could be evaluated in future mechanistic investigations.

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