The β2 clamp in the Mycobacterium tuberculosis DNA polymerase III αβ2ε replicase promotes polymerization and reduces exonuclease activity

结核分枝杆菌 DNA 聚合酶 III αβ2ε 复制酶中的 β2 钳可促进聚合并降低核酸外切酶活性

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作者:Shoujin Gu, Wenjuan Li, Hongtai Zhang, Joy Fleming, Weiqiang Yang, Shihua Wang, Wenjing Wei, Jie Zhou, Guofeng Zhu, Jiaoyu Deng, Jian Hou, Ying Zhou, Shiqiang Lin, Xian-En Zhang, Lijun Bi

Abstract

DNA polymerase III (DNA pol III) is a multi-subunit replication machine responsible for the accurate and rapid replication of bacterial genomes, however, how it functions in Mycobacterium tuberculosis (Mtb) requires further investigation. We have reconstituted the leading-strand replication process of the Mtb DNA pol III holoenzyme in vitro, and investigated the physical and functional relationships between its key components. We verify the presence of an αβ2ε polymerase-clamp-exonuclease replicase complex by biochemical methods and protein-protein interaction assays in vitro and in vivo and confirm that, in addition to the polymerase activity of its α subunit, Mtb DNA pol III has two potential proofreading subunits; the α and ε subunits. During DNA replication, the presence of the β2 clamp strongly promotes the polymerization of the αβ2ε replicase and reduces its exonuclease activity. Our work provides a foundation for further research on the mechanism by which the replication machinery switches between replication and proofreading and provides an experimental platform for the selection of antimicrobials targeting DNA replication in Mtb.

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