Phosphate binding in the active centre of tomato multifunctional nuclease TBN1 and analysis of superhelix formation by the enzyme

番茄多功能核酸酶TBN1活性中心磷酸盐结合及酶超螺旋形成分析

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作者:Jan Stránský, Tomáš Koval', Tomáš Podzimek, Anna Týcová, Petra Lipovová, Jaroslav Matoušek, Petr Kolenko, Karla Fejfarová, Jarmila Dušková, Tereza Skálová, Jindřich Hašek, Jan Dohnálek

Abstract

Tomato multifunctional nuclease TBN1 belongs to the type I nuclease family, which plays an important role in apoptotic processes and cell senescence in plants. The newly solved structure of the N211D mutant is reported. Although the main crystal-packing motif (the formation of superhelices) is conserved, the details differ among the known structures. A phosphate ion was localized in the active site of the enzyme. The binding of the surface loop to the active centre is stabilized by the phosphate ion, which correlates with the observed aggregation of TBN1 in phosphate buffer. The conserved binding of the surface loop to the active centre suggests biological relevance of the contact in a regulatory function or in the formation of oligomers.

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