Abstract
Action potentials trigger neurotransmitter release at the presynaptic active zone with spatiotemporal precision. This is supported by protein machinery that mediates synaptic vesicle priming and clustering of Ca(V)2 Ca(2+) channels nearby. One model posits that scaffolding proteins directly tether vesicles to Ca(V)2s; however, here we find that at mouse hippocampal synapses, Ca(V)2 clustering and vesicle priming are executed by separate machineries. Ca(V)2 nanoclusters are positioned at variable distances from those of the priming protein Munc13. The active zone organizer RIM anchors both proteins but distinct interaction motifs independently execute these functions. In transfected cells, Liprin-α and RIM form co-assemblies that are separate from Ca(V)2-organizing complexes. At synapses, Liprin-α1-Liprin-α4 knockout impairs vesicle priming but not Ca(V)2 clustering. The cell adhesion protein PTPσ recruits Liprin-α, RIM and Munc13 into priming complexes without co-clustering Ca(V)2s. We conclude that active zones consist of distinct machineries to organize Ca(V)2s and prime vesicles, and Liprin-α and PTPσ specifically support priming site assembly.