ILV methyl NMR resonance assignments of the 81 kDa E. coli β-clamp

81 kDa 大肠杆菌 β-clamp 的 ILV 甲基 NMR 共振归属

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作者:Socheata Lim, Sam Mahdi, Penny J Beuning, Dmitry M Korzhnev

Abstract

The ring-shaped E. coli β-clamp protein is an 81 kDa head-to-tail homodimer, which serves as a processivity factor anchoring the replicative polymerase to DNA, thereby increasing replication processivity and speed. In addition, it facilitates numerous protein transactions that take place on DNA during replication, repair, and damage response. We used a structure-based approach to obtain nearly complete Ile, Leu and Val side-chain methyl NMR resonance assignments of the wild-type β-clamp and its stabilized T45R/S107R variant based on site directed mutagenesis and the analysis of methyl-methyl NOESY data. The obtained assignments will facilitate future studies of the β-clamp interactions and dynamics.

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