Modified Dendritic cell-based T-cell expansion protocol and single-cell multi-omics allow for the selection of the most expanded and in vitro-effective clonotype via profiling of thousands of MAGE-A3-specific T-cells

改良的基于树突状细胞的T细胞扩增方案和单细胞多组学技术,可通过对数千个MAGE-A3特异性T细胞进行分析,筛选出扩增程度最高且体外疗效最好的克隆型。

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作者:Sergey Sennikov ,Marina Volynets ,Saleh Alrhmoun ,Roman Perik-Zavodskii ,Olga Perik-Zavodskaia ,Marina Fisher ,Julia Lopatnikova ,Julia Shevchenko ,Kirill Nazarov ,Julia Philippova ,Alaa Alsalloum ,Vasily Kurilin ,Alexander Silkov

Abstract

Introduction: Adoptive cell therapy using TCR-engineered T-cells is one of the most effective strategies against tumor cells. The TCR T-cell approach has been well tested against a variety of blood neoplasms but is yet to be deeply tested against solid tumors. Among solid tumors, cancer-testis antigens are the most prominent targets for tumor-specific therapy, as they are usually found on cells that lie behind blood-tissue barriers. Methods: We have employed a novel efficient protocol for MAGE-A3-specific T-cell clonal expansion, performed single-cell multi-omic analysis of the expanded T-cells via BD Rhapsody, engineered a selected T-cell receptor into a lentiviral construct, and tested it in an in vitro LDH-cytotoxicity test. Results and discussion: We have observed a 191-fold increase in the MAGE-A3-specific T-cell abundance, obtained a dominant T-cell receptor via single-cell multi-omic BD Rhapsody data analysis in the TCRscape bioinformatics tool, and observed potent cytotoxicity of the dominant-clonotype transduced TCR T-cells against a MAGE-A3-positive tumor. We have demonstrated the efficiency of our T-cell enrichment protocol in obtaining potent anti-tumor T-cells and their T-cell receptors, especially when paired with the modern single-cell analysis methods.

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