Integrative Proteomics and Metabolomics Analysis Reveals the Role of Small Signaling Peptide Rapid Alkalinization Factor 34 (RALF34) in Cucumber Roots

综合蛋白质组学和代谢组学分析揭示小信号肽快速碱化因子 34 (RALF34) 在黄瓜根部的作用

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作者:Julia Shumilina, Alexey S Kiryushkin, Nadezhda Frolova, Valeria Mashkina, Elena L Ilina, Vera A Puchkova, Katerina Danko, Svetlana Silinskaya, Evgeny B Serebryakov, Alena Soboleva, Tatiana Bilova, Anastasia Orlova, Elizaveta D Guseva, Egor Repkin, Katharina Pawlowski, Andrej Frolov, Kirill N Demchen

Abstract

The main role of RALF small signaling peptides was reported to be the alkalization control of the apoplast for improvement of nutrient absorption; however, the exact function of individual RALF peptides such as RALF34 remains unknown. The Arabidopsis RALF34 (AtRALF34) peptide was proposed to be part of the gene regulatory network of lateral root initiation. Cucumber is an excellent model for studying a special form of lateral root initiation taking place in the meristem of the parental root. We attempted to elucidate the role of the regulatory pathway in which RALF34 is a participant using cucumber transgenic hairy roots overexpressing CsRALF34 for comprehensive, integrated metabolomics and proteomics studies, focusing on the analysis of stress response markers. CsRALF34 overexpression resulted in the inhibition of root growth and regulation of cell proliferation, specifically in blocking the G2/M transition in cucumber roots. Based on these results, we propose that CsRALF34 is not part of the gene regulatory networks involved in the early steps of lateral root initiation. Instead, we suggest that CsRALF34 modulates ROS homeostasis and triggers the controlled production of hydroxyl radicals in root cells, possibly associated with intracellular signal transduction. Altogether, our results support the role of RALF peptides as ROS regulators.

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