Identification of TRPM4 related genes in LUAD by RNA seq and spatial transcriptomics

利用RNA测序和空间转录组学鉴定肺腺癌中TRPM4相关基因

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Abstract

BACKGROUND: Sodium overload-induced cell death is a novel mode of cell death that differs from other modes and is a very promising new target for cancer therapy. In addition, sodium overload-induced cell death plays a crucial role in cancer progression and patient prognosis. Therefore, our study aims to establish a survival prediction model for patients with lung adenocarcinoma (LUAD) based on related genes, exploring the immune landscape and providing new insights for future individualized treatment protocols. METHOD: We analyzed the expression and clinical significance of TRPM4-related genes in LUAD using data from TCGA and GEO databases. We used transcriptomics, immune infiltration assays, and spatial transcriptomics (ST). Kaplan-Meier survival analysis was used to assess the relationship between TRPM4-related genes and prognosis. Enrichment analyses identified biological processes and pathways associated with TRPM4 and also assessed its relationship with the immune microenvironment and drug sensitivity. RESULTS: We identified 19 oncogenic driver genes and modeled proportional hazard regression. The results showed that the survival rate of the high-risk group was significantly reduced in both the training and testing sets. Additionally, the high-risk group exhibited lower levels of immune cell infiltration and immune checkpoint expression compared to the low-risk group. Based on 19 genes, LMNA, PPP2R1A, and PDXK were identified as key genes by single-cell sequencing and spatial transcriptome sequencing. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12672-026-04797-5.

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