Draft genome sequences of 58 isolates of Campylobacter jejuni and Campylobacter coli from domestic ducks

We present the draft genomic sequences of 58 isolates of Campylobacter spp. (32 Campylobacter coli and 26 Campylobacter jejuni) isolated from domestic ducks (Anas platyrhynchos domesticus). This provides a substantial increase in the number of publicly available genomic sequences of Campylobacter isolated from farm-raised ducks in the United States.