JuNkIE-CLImax: exploring multidimensional images in notebooks and the terminal

JuNkIE-CLImax:探索笔记本和终端中的多维图像

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Abstract

Modern microscopy generates multidimensional images. Graphical user interfaces allow visualization of multidimensional images, but image exploration is significantly harder in text-based environments. These include Jupyter notebooks, popular for the distribution of data analysis pipelines; and the terminal, often the only user interface available when accessing images in remote servers. We developed JuNkIE-CLImax, a pair of multidimensional image explorers designed to work in Jupyter notebooks and the terminal, respectively. JuNkIE-CLImax are written in Python, using Rust extensions to optimize performance; they are platform agnostic; and they provide application programming interfaces that enable integration into complex image visualization and analysis pipelines.

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