Integrating bulk and single cell sequencing data to identify prognostic biomarkers and drug candidates in HBV associated hepatocellular carcinoma

整合批量和单细胞测序数据,以鉴定乙型肝炎病毒相关肝细胞癌的预后生物标志物和候选药物

阅读:1

Abstract

Hepatitis B virus (HBV) infection is a major driver of hepatocellular carcinoma (HCC), yet the mechanisms by which HBV triggers HCC and how it interacts with the immune system remain largely undefined. In this study, 53 immune-related key genes involved in HBV-associated HCC progression were identified. By analyzing the mean C-index of 101 machine learning models, the optimal model-combining stepwise Cox regression (forward) with RSF-was developed to characterize the immune risk index. Patients in the high-risk group exhibited worse survival outcomes and increased infiltration of immunosuppressive cells. Integrating PPI analysis with machine learning, SPP1, GHR, and ESR1 emerged as promising druggable targets, with SPP1 notably overexpressed in tumors and linked to adverse outcomes. ScRNA-seq analysis revealed SPP1 was predominantly expressed in angio-TAMs, which may impair anti-tumor immunity by limiting T and NK cell infiltration. It also involved in tumor progression via angiogenesis and EMT pathways. Drug prediction and molecular docking identified small molecules such as myricetin and mefloquine that can target the aforementioned key immune genes, thereby modulating the immune landscape of HBV-HCC. Repurposing these established drugs represents a novel therapeutic avenue, offering both efficacy and expedited clinical translation for HBV-HCC.

特别声明

1、本页面内容包含部分的内容是基于公开信息的合理引用;引用内容仅为补充信息,不代表本站立场。

2、若认为本页面引用内容涉及侵权,请及时与本站联系,我们将第一时间处理。

3、其他媒体/个人如需使用本页面原创内容,需注明“来源:[生知库]”并获得授权;使用引用内容的,需自行联系原作者获得许可。

4、投稿及合作请联系:info@biocloudy.com。