Abstract
Maintaining genetic diversity is vital for biodiversity and livestock sustainability, with monitoring serving as a prerequisite for conservation strategies. As an initial step for developing future strategies, we analysed the genetic diversity and conservation priorities of 16 chicken breeds managed by a government institute in this study. The breeds were classified as native or locally adapted per FAO definitions and grouped by origin (i.e., governmental or private farms). Genetic diversity, assessed through observed and expected heterozygosity, inbreeding coefficients, and linkage disequilibrium, was high in native breeds from government institutions, such as Chungnam White Korean Native (CNW) and Gangwon Black Korean Native (GWL). Private farm breeds, including Hoeungseong-Yakdak (HYD), exhibited lower diversity. Conservation priorities based on contributions to total genetic diversity (HT) and allelic diversity (AT) revealed that locally adapted breeds, such as Cornish (S) and White Leghorn, significantly contributed to HT. Native breeds, such as CNW and Hyuin black, had higher contributions to AT. Combined assessments indicated that S, CNW, and GWL have the highest conservation priorities. Despite lower rankings, unique breeds such as HYD require targeted conservation owing to their distinctiveness. In conclusion, Korean chicken breeds such as S, CNW, and GWL are vital for maintaining genetic diversity among government-managed breeds.