Genomic epidemiology and antimicrobial resistance prevalence of Staphylococcus aureus isolated from bloodstream infections in a tertiary hospital in central China: a 5-year retrospective study

中国中部某三级医院血流感染分离金黄色葡萄球菌的基因组流行病学和抗菌药物耐药性流行情况:一项为期5年的回顾性研究

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Abstract

Staphylococcus aureus causes severe bloodstream infections (BSIs), and methicillin-resistant S. aureus (MRSA) poses a major clinical threat due to strong antimicrobial resistance and limited therapeutic options. This retrospective study analyzed 96 S. aureus isolates from nosocomial BSIs in a tertiary hospital in central China from 2020 to 2024, to clarify the epidemiological characteristics of antimicrobial resistance and transmission mechanisms. Antimicrobial susceptibility testing, whole-genome sequencing and bioinformatics analysis were performed to identify antibiotics c resistance genes (ARGs), virulence factors (VFs), multilocus sequence typing (MLST), staphylococcal cassette chromosome mec (SCCmec) typing and phylogenetic features. MRSA accounted for 72.92% (70/96) of all strains. The total number of S. aureus isolates trended downward, while the MRSA proportion remained stable at 57.14-100.00%, with the Department of Nephrology showing the highest infection rate (36.46%). All strains were susceptible to linezolid and rifampicin; one vancomycin-resistant, one tigecycline-resistant and one phenotypically discordant MRSA strain were detected. Genomic analysis identified 29 resistance gene types, with frequent co-carriage of mec and bla family genes. Strains carried abundant VFs (average 74 genes per strain), including 45 core virulence genes and widely distributed lukF-PV/lukS-PV. MLST revealed 21 sequence types, dominated by ST59 (21.88%) and persistently epidemic ST22. SCCmec type IV (58.93%) was predominant, with no mecI in type IV/V strains and three pseudo-SCCmec carriers. Genomic epidemiology provides reliable evidence for precise medication, targeted prevention and control of MRSA BSIs, and references for understanding S. aureus antimicrobial resistance evolution.

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