Abstract
Methylations at position N(6) of internal adenosines (m(6)As) are the most abundant and widespread mRNA modifications. These modifications play crucial roles in reproduction, growth, and development by controlling gene expression patterns at the posttranscriptional level. Their function is decoded by readers that share the YTH domain, which forms a hydrophobic pocket that directly accommodates the m(6)A residues. While the physiological and molecular functions of YTH readers have been extensively studied in animals, little is known about plant readers, even though m(6)As are crucial for plant survival and development. Viridiplantae contains high numbers of YTH domain proteins. Here, we performed comprehensive evolutionary analysis of YTH domain proteins and demonstrated that they are highly likely to be actual readers with redundant as well as specific functions. We also show that the ECT2 protein from Arabidopsis thaliana binds to m(6)A-containing RNAs in vivo and that this property relies on the m(6)A binding pocket carried by its YTH domain. ECT2 is cytoplasmic and relocates to stress granules upon heat exposure, suggesting that it controls mRNA fate in the cytosol. Finally, we demonstrate that ECT2 acts to decode the m(6)A signal in the trichome and is required for their normal branching through controlling their ploidy levels.