Abstract
MOTIVATION: The scToppR package provides a ToppGene interface from R programs/scripts to fully access/control the database for functional enrichment without the need for active interaction on its Web site (https://toppgene.cchmc.org/). RESULTS: The library facilitates the functional enrichment analysis and visualization by interacting with ToppGene, downloading the functional enrichment dataframes, and using R environment to visualize the final results. AVAILABILITY AND IMPLEMENTATION: Code and documentation are currently available at https://github.com/BioinformaticsMUSC/scToppR.