Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria

各种事件已经将食用海藻消化基因从海洋转移到人类肠道细菌中

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作者:Nicholas A Pudlo, Gabriel Vasconcelos Pereira, Jaagni Parnami, Melissa Cid, Stephanie Markert, Jeffrey P Tingley, Frank Unfried, Ahmed Ali, Neha J Varghese, Kwi S Kim, Austin Campbell, Karthik Urs, Yao Xiao, Ryan Adams, Duña Martin, David N Bolam, Dörte Becher, Emiley A Eloe-Fadrosh, Thomas M Schmid

Abstract

Humans harbor numerous species of colonic bacteria that digest fiber polysaccharides in commonly consumed terrestrial plants. More recently in history, regional populations have consumed edible macroalgae seaweeds containing unique polysaccharides. It remains unclear how extensively gut bacteria have adapted to digest these nutrients. Here, we show that the ability of gut bacteria to digest seaweed polysaccharides is more pervasive than previously appreciated. Enrichment-cultured Bacteroides harbor previously discovered genes for seaweed degradation, which have mobilized into several members of this genus. Additionally, other examples of marine bacteria-derived genes, and their mobile DNA elements, are involved in gut microbial degradation of seaweed polysaccharides, including genes in gut-resident Firmicutes. Collectively, these results uncover multiple separate events that have mobilized the genes encoding seaweed-degrading-enzymes into gut bacteria. This work further underscores the metabolic plasticity of the human gut microbiome and global exchange of genes in the context of dietary selective pressures.

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