Critical assessment of chromatographic metadata in publicly available metabolomics data repositories

对公开的代谢组学数据库中色谱元数据的严格评估

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作者:Eva-Maria Harrieder, Fleming Kretschmer, Warwick Dunn, Sebastian Böcker, Michael Witting

Conclusion

Reporting of chromatographic metadata is currently not unified. Our recommended suggestions for metadata reporting will enable more standardization and automatization in future reporting.

Methods

We acquired an overview on the current reporting of chromatographic separation conditions. For this purpose, we defined the following information as important details that have to be provided: column name and dimension, flow rate, temperature, composition of eluents and gradient.

Results

We found that 70% of descriptions of the chromatographic setups are incomplete (according to our definition) and an additional 10% of the descriptions contained ambiguous and/or incorrect information. Accordingly, only about 20% of the descriptions allow further (re-)use of the data, e.g. for RT prediction. Therefore, we have started to develop a unified and standardized notation for chromatographic metadata with detailed and specific description of eluents, columns and gradients.

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