Taxonomical and functional composition of strawberry microbiome is genotype-dependent

草莓微生物组的分类和功能组成取决于基因型

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作者:Daniela Sangiorgio, Antonio Cellini, Irene Donati, Erika Ferrari, Benjawan Tanunchai, Sara Fareed Mohamed Wahdan, Dolaya Sadubsarn, Brian Farneti, Alice Checcucci, François Buscot, Francesco Spinelli, Witoon Purahong

Conclusion

This work sheds light on the interaction of cultivated strawberry genotypes with a variety of microbes and highlights the importance of their applications to increase the sustainability of fruit crop production.

Methods

Strawberry-associatedfungal and bacterial microbiomes were characterised by Next-Generation Sequencing and the potential functions expressed by the bacterial microbiome were analysed by both in silico and in vitro characterisation of plant growth-promoting abilities of native bacteria. Additionally, the association between the strawberry microbiome, plant disease tolerance, plant mineral nutrient content, and fruit quality was investigated.

Results

Results showed that thestrawberry core microbiome included 24 bacteria and 15 fungal operational taxonomicunits (OTUs).However, plant organ and genotype had a significant role in determining the taxonomical and functional composition of microbial communities. Interestingly, the cultivar with the highesttolerance against powdery mildew and leaf spot and the highest fruit productivity was the only one able to ubiquitously recruit the beneficial bacterium, Pseudomonasfluorescens, and to establish a mutualistic symbiosis with the arbuscular mycorrhizaRhizophagus irregularis.

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