Discovery of N-Trisubstituted Pyrimidine Derivatives as Type I RET and RET Gatekeeper Mutant Inhibitors with a Novel Kinase Binding Pose

发现N-三取代嘧啶衍生物作为I型RET和RET门控突变体抑制剂,具有新型激酶结合姿势

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作者:Lingtian Zhang ,Marialuisa Moccia ,David C Briggs ,Jaideep B Bharate ,Naga Rajiv Lakkaniga ,Phillip Knowles ,Wei Yan ,Phuc Tran ,Anupreet Kharbanda ,Xiuqi Wang ,Yuet-Kin Leung ,Brendan Frett ,Massimo Santoro ,Neil Q McDonald ,Francesca Carlomagno ,Hong-Yu Li

Abstract

Mutations of the rearranged during transfection (RET) kinase are frequently reported in cancer, which make it as an attractive therapeutic target. Herein, we discovered a series of N-trisubstituted pyrimidine derivatives as potent inhibitors for both wild-type (wt) RET and RETV804M, which is a resistant mutant for several FDA-approved inhibitors. The X-ray structure of a representative inhibitor with RET revealed that the compound binds in a unique pose that bifurcates beneath the P-loop and confirmed the compound as a type I inhibitor. Through the structure-activity relationship (SAR) study, compound 20 was identified as a lead compound, showing potent inhibition of both RET and RETV804M. Additionally, compound 20 displayed potent antiproliferative activity of CCDC6-RET-driven LC-2/ad cells. Analysis of RET phosphorylation indicated that biological activity was mediated by RET inhibition. Collectively, N-trisubstituted pyrimidine derivatives could serve as scaffolds for the discovery and development of potent inhibitors of type I RET and its gatekeeper mutant for the treatment of RET-driven cancers.

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