Discovery and pharmacophoric characterization of chemokine network inhibitors using phage-display, saturation mutagenesis and computational modelling

利用噬菌体展示、饱和诱变和计算建模技术发现和表征趋化因子网络抑制剂的药效团

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作者:Serena Vales # ,Jhanna Kryukova # ,Soumyanetra Chandra ,Gintare Smagurauskaite ,Megan Payne ,Charlie J Clark ,Katrin Hafner ,Philomena Mburu ,Stepan Denisov ,Graham Davies ,Carlos Outeiral ,Charlotte M Deane ,Garrett M Morris ,Shoumo Bhattacharya

Abstract

CC and CXC-chemokines are the primary drivers of chemotaxis in inflammation, but chemokine network redundancy thwarts pharmacological intervention. Tick evasins promiscuously bind CC and CXC-chemokines, overcoming redundancy. Here we show that short peptides that promiscuously bind both chemokine classes can be identified from evasins by phage-display screening performed with multiple chemokines in parallel. We identify two conserved motifs within these peptides and show using saturation-mutagenesis phage-display and chemotaxis studies of an exemplar peptide that an anionic patch in the first motif and hydrophobic, aromatic and cysteine residues in the second are functionally necessary. AlphaFold2-Multimer modelling suggests that the peptide occludes distinct receptor-binding regions in CC and in CXC-chemokines, with the first and second motifs contributing ionic and hydrophobic interactions respectively. Our results indicate that peptides with broad-spectrum anti-chemokine activity and therapeutic potential may be identified from evasins, and the pharmacophore characterised by phage display, saturation mutagenesis and computational modelling.

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