日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Computational design of serine hydrolases

丝氨酸水解酶的计算设计

Lauko, Anna; Pellock, Samuel J; Sumida, Kiera H; Anishchenko, Ivan; Juergens, David; Ahern, Woody; Jeung, Jihun; Shida, Alexander F; Hunt, Andrew; Kalvet, Indrek; Norn, Christoffer; Humphreys, Ian R; Jamieson, Cooper; Krishna, Rohith; Kipnis, Yakov; Kang, Alex; Brackenbrough, Evans; Bera, Asim K; Sankaran, Banumathi; Houk, K N; Baker, David

Atomic context-conditioned protein sequence design using LigandMPNN

利用 LigandMPNN 进行原子上下文条件蛋白质序列设计

Dauparas, Justas; Lee, Gyu Rie; Pecoraro, Robert; An, Linna; Anishchenko, Ivan; Glasscock, Cameron; Baker, David

Modeling protein-small molecule conformational ensembles with PLACER

利用PLACER对蛋白质-小分子构象集合进行建模

Anishchenko, Ivan; Kipnis, Yakov; Kalvet, Indrek; Zhou, Guangfeng; Krishna, Rohith; Pellock, Samuel J; Lauko, Anna; Lee, Gyu Rie; An, Linna; Dauparas, Justas; DiMaio, Frank; Baker, David

Binding and sensing diverse small molecules using shape-complementary pseudocycles

利用形状互补的伪环结合和检测多种小分子

An, Linna; Said, Meerit; Tran, Long; Majumder, Sagardip; Goreshnik, Inna; Lee, Gyu Rie; Juergens, David; Dauparas, Justas; Anishchenko, Ivan; Coventry, Brian; Bera, Asim K; Kang, Alex; Levine, Paul M; Alvarez, Valentina; Pillai, Arvind; Norn, Christoffer; Feldman, David; Zorine, Dmitri; Hicks, Derrick R; Li, Xinting; Sanchez, Mariana Garcia; Vafeados, Dionne K; Salveson, Patrick J; Vorobieva, Anastassia A; Baker, David

Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNA

利用 RoseTTAFoldNA 精确预测蛋白质-核酸复合物

Baek, Minkyung; McHugh, Ryan; Anishchenko, Ivan; Jiang, Hanlun; Baker, David; DiMaio, Frank

Protein interactions in human pathogens revealed through deep learning

通过深度学习揭示人类病原体中的蛋白质相互作用

Humphreys, Ian R; Zhang, Jing; Baek, Minkyung; Wang, Yaxi; Krishnakumar, Aditya; Pei, Jimin; Anishchenko, Ivan; Tower, Catherine A; Jackson, Blake A; Warrier, Thulasi; Hung, Deborah T; Peterson, S Brook; Mougous, Joseph D; Cong, Qian; Baker, David

Essential and virulence-related protein interactions of pathogens revealed through deep learning

通过深度学习揭示病原体必需和毒力相关的蛋白质相互作用

Humphreys, Ian R; Zhang, Jing; Baek, Minkyung; Wang, Yaxi; Krishnakumar, Aditya; Pei, Jimin; Anishchenko, Ivan; Tower, Catherine A; Jackson, Blake A; Warrier, Thulasi; Hung, Deborah T; Peterson, S Brook; Mougous, Joseph D; Cong, Qian; Baker, David

De novo design of luciferases using deep learning

利用深度学习从头设计荧光素酶

Yeh, Andy Hsien-Wei; Norn, Christoffer; Kipnis, Yakov; Tischer, Doug; Pellock, Samuel J; Evans, Declan; Ma, Pengchen; Lee, Gyu Rie; Zhang, Jason Z; Anishchenko, Ivan; Coventry, Brian; Cao, Longxing; Dauparas, Justas; Halabiya, Samer; DeWitt, Michelle; Carter, Lauren; Houk, K N; Baker, David

De novo design of diverse small molecule binders and sensors using Shape Complementary Pseudocycles

利用形状互补伪环从头设计多种小分子结合剂和传感器

An, Linna; Said, Meerit; Tran, Long; Majumder, Sagardip; Goreshnik, Inna; Lee, Gyu Rie; Juergens, David; Dauparas, Justas; Anishchenko, Ivan; Coventry, Brian; Bera, Asim K; Kang, Alex; Levine, Paul M; Alvarez, Valentina; Pillai, Arvind; Norn, Christoffer; Feldman, David; Zorine, Dmitri; Hicks, Derrick R; Li, Xinting; Sanchez, Mariana Garcia; Vafeados, Dionne K; Salveson, Patrick J; Vorobieva, Anastassia A; Baker, David

Scaffolding protein functional sites using deep learning

利用深度学习构建蛋白质功能位点支架

Wang, Jue; Lisanza, Sidney; Juergens, David; Tischer, Doug; Watson, Joseph L; Castro, Karla M; Ragotte, Robert; Saragovi, Amijai; Milles, Lukas F; Baek, Minkyung; Anishchenko, Ivan; Yang, Wei; Hicks, Derrick R; Expòsit, Marc; Schlichthaerle, Thomas; Chun, Jung-Ho; Dauparas, Justas; Bennett, Nathaniel; Wicky, Basile I M; Muenks, Andrew; DiMaio, Frank; Correia, Bruno; Ovchinnikov, Sergey; Baker, David