日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

STPath: a generative foundation model for integrating spatial transcriptomics and whole-slide images

STPath:一种用于整合空间转录组学和全切片图像的生成式基础模型

Huang, Tinglin; Liu, Tianyu; Babadi, Mehrtash; Ying, Rex; Jin, Wengong

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients.

COVID-19 肝脏的单核和空间转录组图谱揭示了患者的拓扑、功能和再生器官破坏

Pita-Juarez Yered, Karagkouni Dimitra, Kalavros Nikolaos, Melms Johannes C, Niezen Sebastian, Delorey Toni M, Essene Adam L, Brook Olga R, Pant Deepti, Skelton-Badlani Disha, Naderi Pourya, Huang Pinzhu, Pan Liuliu, Hether Tyler, Andrews Tallulah S, Ziegler Carly G K, Reeves Jason, Myloserdnyy Andriy, Chen Rachel, Nam Andy, Phelan Stefan, Liang Yan, Gregory Mark, He Shanshan, Patrick Michael, Rane Tushar, Wardhani Aster, Amin Amit Dipak, Biermann Jana, Hibshoosh Hanina, Veregge Molly, Kramer Zachary, Jacobs Christopher, Yalcin Yusuf, Phillips Devan, Slyper Michal, Subramanian Ayshwarya, Ashenberg Orr, Bloom-Ackermann Zohar, Tran Victoria M, Gomez James, Sturm Alexander, Zhang Shuting, Fleming Stephen J, Warren Sarah, Beechem Joseph, Hung Deborah, Babadi Mehrtash, Padera Robert F Jr, MacParland Sonya A, Bader Gary D, Imad Nasser, Solomon Isaac H, Miller Eric, Riedel Stefan, Porter Caroline B M, Villani Alexandra-Chloé, Tsai Linus T-Y, Hide Winston, Szabo Gyongyi, Hecht Jonathan, Rozenblatt-Rosen Orit, Shalek Alex K, Izar Benjamin, Regev Aviv, Popov Yury V, Jiang Z Gordon, Vlachos Ioannis S

multiVIB: A unified probabilistic contrastive learning framework for atlas-scale integration of single-cell multi-omics data

multiVIB:一种用于单细胞多组学数据图谱级整合的统一概率对比学习框架

Xu, Yang; Fleming, Stephen J; Wang, Brice; Schoenbeck, Erin G; Babadi, Mehrtash; Huo, Bing-Xing

Accelerating scRNA-seq Analysis: Automated cell type annotation using representation learning and vector search

加速单细胞RNA测序分析:利用表征学习和向量搜索实现细胞类型自动注释

Williams, Stephen R; Grab, Fedor; Kamath, Govinda M; Ordabayev, Yerdos; Mellen, Jeff; Roelli, Patrick; Cibulskis, Kristian; Lehnert, Erik; Xie, Fen; Covarrubias, Miguel; Rahman, Nur-Taz; Tickle, Timothy; Erhan, Emre; Malfroy-Camine, Nicolas; Lydon, Kevin; Babadi, Mehrtash; Delaney, Nigel F

Learning representations for image-based profiling of perturbations

学习用于基于图像的扰动分析的表征

Moshkov, Nikita; Bornholdt, Michael; Benoit, Santiago; Smith, Matthew; McQuin, Claire; Goodman, Allen; Senft, Rebecca A; Han, Yu; Babadi, Mehrtash; Horvath, Peter; Cimini, Beth A; Carpenter, Anne E; Singh, Shantanu; Caicedo, Juan C

GATK-gCNV enables the discovery of rare copy number variants from exome sequencing data

GATK-gCNV能够从外显子组测序数据中发现罕见的拷贝数变异。

Babadi, Mehrtash; Fu, Jack M; Lee, Samuel K; Smirnov, Andrey N; Gauthier, Laura D; Walker, Mark; Benjamin, David I; Zhao, Xuefang; Karczewski, Konrad J; Wong, Isaac; Collins, Ryan L; Sanchis-Juan, Alba; Brand, Harrison; Banks, Eric; Talkowski, Michael E

High-depth sequencing characterization of viral dynamics across tissues in fatal COVID-19 reveals compartmentalized infection

对致命性 COVID-19 患者组织中病毒动力学的深度测序表征揭示了感染的区室化现象。

Normandin, Erica; Rudy, Melissa; Barkas, Nikolaos; Schaffner, Stephen F; Levine, Zoe; Padera, Robert F Jr; Babadi, Mehrtash; Mukerji, Shibani S; Park, Daniel J; MacInnis, Bronwyn L; Siddle, Katherine J; Sabeti, Pardis C; Solomon, Isaac H

SynapseCLR: Uncovering features of synapses in primary visual cortex through contrastive representation learning

SynapseCLR:通过对比表征学习揭示初级视觉皮层突触的特征

Wilson, Alyssa; Babadi, Mehrtash

Rare coding variation provides insight into the genetic architecture and phenotypic context of autism

罕见的编码变异有助于深入了解自闭症的遗传结构和表型背景。

Fu, Jack M; Satterstrom, F Kyle; Peng, Minshi; Brand, Harrison; Collins, Ryan L; Dong, Shan; Wamsley, Brie; Klei, Lambertus; Wang, Lily; Hao, Stephanie P; Stevens, Christine R; Cusick, Caroline; Babadi, Mehrtash; Banks, Eric; Collins, Brett; Dodge, Sheila; Gabriel, Stacey B; Gauthier, Laura; Lee, Samuel K; Liang, Lindsay; Ljungdahl, Alicia; Mahjani, Behrang; Sloofman, Laura; Smirnov, Andrey N; Barbosa, Mafalda; Betancur, Catalina; Brusco, Alfredo; Chung, Brian H Y; Cook, Edwin H; Cuccaro, Michael L; Domenici, Enrico; Ferrero, Giovanni Battista; Gargus, J Jay; Herman, Gail E; Hertz-Picciotto, Irva; Maciel, Patricia; Manoach, Dara S; Passos-Bueno, Maria Rita; Persico, Antonio M; Renieri, Alessandra; Sutcliffe, James S; Tassone, Flora; Trabetti, Elisabetta; Campos, Gabriele; Cardaropoli, Simona; Carli, Diana; Chan, Marcus C Y; Fallerini, Chiara; Giorgio, Elisa; Girardi, Ana Cristina; Hansen-Kiss, Emily; Lee, So Lun; Lintas, Carla; Ludena, Yunin; Nguyen, Rachel; Pavinato, Lisa; Pericak-Vance, Margaret; Pessah, Isaac N; Schmidt, Rebecca J; Smith, Moyra; Costa, Claudia I S; Trajkova, Slavica; Wang, Jaqueline Y T; Yu, Mullin H C; Cutler, David J; De Rubeis, Silvia; Buxbaum, Joseph D; Daly, Mark J; Devlin, Bernie; Roeder, Kathryn; Sanders, Stephan J; Talkowski, Michael E

Transcriptional and Cellular Diversity of the Human Heart

人类心脏的转录和细胞多样性

Tucker, Nathan R; Chaffin, Mark; Fleming, Stephen J; Hall, Amelia W; Parsons, Victoria A; Bedi, Kenneth C Jr; Akkad, Amer-Denis; Herndon, Caroline N; Arduini, Alessandro; Papangeli, Irinna; Roselli, Carolina; Aguet, François; Choi, Seung Hoan; Ardlie, Kristin G; Babadi, Mehrtash; Margulies, Kenneth B; Stegmann, Christian M; Ellinor, Patrick T