日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Complete combinatorial mutational enumeration of a protein functional site enables sequence-landscape mapping and identifies highly-mutated variants that retain activity.

对蛋白质功能位点进行完整的组合突变枚举,可以绘制序列景观图,并识别保留活性的高度突变变体

Colom Mireia SolÃ, Vučinić Jelena, Adolf-Bryfogle Jared, Bowman James W, Verel Sébastien, Moczygemba Isabelle, Schiex Thomas, Simoncini David, Bahl Christopher D

Growing Glycans in Rosetta: Accurate de novo glycan modeling, density fitting, and rational sequon design

在 Rosetta 中构建聚糖:精确的从头聚糖建模、密度拟合和合理的序列设计

Adolf-Bryfogle, Jared; Labonte, Jason W; Kraft, John C; Shapovalov, Maxim; Raemisch, Sebastian; Lütteke, Thomas; DiMaio, Frank; Bahl, Christopher D; Pallesen, Jesper; King, Neil P; Gray, Jeffrey J; Kulp, Daniel W; Schief, William R

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

通过广泛的自动化基准测试确保生物大分子建模的科学可重复性

Koehler Leman, Julia; Lyskov, Sergey; Lewis, Steven M; Adolf-Bryfogle, Jared; Alford, Rebecca F; Barlow, Kyle; Ben-Aharon, Ziv; Farrell, Daniel; Fell, Jason; Hansen, William A; Harmalkar, Ameya; Jeliazkov, Jeliazko; Kuenze, Georg; Krys, Justyna D; Ljubetič, Ajasja; Loshbaugh, Amanda L; Maguire, Jack; Moretti, Rocco; Mulligan, Vikram Khipple; Nance, Morgan L; Nguyen, Phuong T; Ó Conchúir, Shane; Roy Burman, Shourya S; Samanta, Rituparna; Smith, Shannon T; Teets, Frank; Tiemann, Johanna K S; Watkins, Andrew; Woods, Hope; Yachnin, Brahm J; Bahl, Christopher D; Bailey-Kellogg, Chris; Baker, David; Das, Rhiju; DiMaio, Frank; Khare, Sagar D; Kortemme, Tanja; Labonte, Jason W; Lindorff-Larsen, Kresten; Meiler, Jens; Schief, William; Schueler-Furman, Ora; Siegel, Justin B; Stein, Amelie; Yarov-Yarovoy, Vladimir; Kuhlman, Brian; Leaver-Fay, Andrew; Gront, Dominik; Gray, Jeffrey J; Bonneau, Richard

Toward complete rational control over protein structure and function through computational design

通过计算设计实现对蛋白质结构和功能的完全理性控制

Adolf-Bryfogle, Jared; Teets, Frank D; Bahl, Christopher D

Integration of the Rosetta suite with the python software stack via reproducible packaging and core programming interfaces for distributed simulation

通过可复现的打包方式和用于分布式仿真的核心编程接口,将 Rosetta 套件与 Python 软件栈集成。

Ford, Alexander S; Weitzner, Brian D; Bahl, Christopher D

Structural characterization and computational analysis of PDZ domains in Monosiga brevicollis

Monosiga brevicollis 中 PDZ 结构域的结构表征和计算分析

Gao, Melody; Mackley, Iain G P; Mesbahi-Vasey, Samaneh; Bamonte, Haley A; Struyvenberg, Sarah A; Landolt, Louisa; Pederson, Nick J; Williams, Lucy I; Bahl, Christopher D; Brooks, Lionel 3rd; Amacher, Jeanine F

Cytosolic expression, solution structures, and molecular dynamics simulation of genetically encodable disulfide-rich de novo designed peptides

胞质表达、溶液结构和基因编码的富含二硫键的从头设计肽的分子动力学模拟

Buchko, Garry W; Pulavarti, Surya V S R K; Ovchinnikov, Victor; Shaw, Elizabeth A; Rettie, Stephen A; Myler, Peter J; Karplus, Martin; Szyperski, Thomas; Baker, David; Bahl, Christopher D

An epoxide hydrolase secreted by Pseudomonas aeruginosa decreases mucociliary transport and hinders bacterial clearance from the lung

铜绿假单胞菌分泌的一种环氧化物水解酶会降低黏液纤毛清除功能,阻碍肺部细菌的清除。

Hvorecny, Kelli L; Dolben, Emily; Moreau-Marquis, Sophie; Hampton, Thomas H; Shabaneh, Tamer B; Flitter, Becca A; Bahl, Christopher D; Bomberger, Jennifer M; Levy, Bruce D; Stanton, Bruce A; Hogan, Deborah A; Madden, Dean R

The cif Virulence Factor Gene Is Present in Isolates From Patients With Pseudomonas aeruginosa Keratitis

在铜绿假单胞菌角膜炎患者分离株中存在cif毒力因子基因

Bahl, Christopher D; St Laurent, Jessica D; Karthikeyan, R Siva Ganesa; Priya, J Lakshmi; Prajna, Lalitha; Zegans, Michael E; Madden, Dean R

Accurate de novo design of hyperstable constrained peptides

精确地从头设计超稳定约束肽

Bhardwaj, Gaurav; Mulligan, Vikram Khipple; Bahl, Christopher D; Gilmore, Jason M; Harvey, Peta J; Cheneval, Olivier; Buchko, Garry W; Pulavarti, Surya V S R K; Kaas, Quentin; Eletsky, Alexander; Huang, Po-Ssu; Johnsen, William A; Greisen, Per Jr; Rocklin, Gabriel J; Song, Yifan; Linsky, Thomas W; Watkins, Andrew; Rettie, Stephen A; Xu, Xianzhong; Carter, Lauren P; Bonneau, Richard; Olson, James M; Coutsias, Evangelos; Correnti, Colin E; Szyperski, Thomas; Craik, David J; Baker, David