日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

CanSig Benchmarks Methods for Reproducible Cancer Cell State Discovery from Single-Cell Transcriptomic Data

CanSig 基准方法用于从单细胞转录组数据中发现可重复的癌细胞状态

Barkmann, Florian; Yates, Josephine; Czyż, Paweł; Kraft, Agnieszka; Glettig, Marc; Beerenwinkel, Niko; Boeva, Valentina

Unifying non-Markovian dynamics and agent heterogeneity in scalable stochastic networks

统一可扩展随机网络中的非马尔可夫动力学和代理异质性

Pélissier, Aurélien; Phan, Miroslav; Le Bail, Didier; Beerenwinkel, Niko; Rodríguez Martínez, María

SARS-CoV-2 wastewater genomic surveillance: approaches, challenges, and opportunities

SARS-CoV-2废水基因组监测:方法、挑战和机遇

Munteanu, Viorel; Saldana, Michael A; Dreifuss, David; Ouyang, Wenhao O; Ferdous, Jannatul; Mohebbi, Fatemeh; Roseberry, Jessica Schlueter; Ciorba, Dumitru; Bostan, Viorel; Gordeev, Victor; Drabcinski, Nicolae; Su, Justin Maine; Kasianchuk, Nadiia; Sharma, Nitesh Kumar; Knyazev, Sergey; Aßmann, Eva; Lobiuc, Andrei; Covasa, Mihai; Crandall, Keith A; Wu, Nicholas C; Mason, Christopher E; Tierney, Braden T; Lucaci, Alexander G; Ophoff, Roel A; Gibas, Cynthia; Rzymski, Piotr; Skums, Pavel; Solo-Gabriele, Helena; Niko, Beerenwinkel; Zelikovsky, Alex; Hölzer, Martin; Smith, Adam; Mangul, Serghei

Generalizable machine learning models for rapid antimicrobial resistance prediction in unseen health care settings

用于在未知的医疗保健环境中快速预测抗菌素耐药性的通用机器学习模型

Duroux, Diane; Meyer, Paul P; Visonà, Giovanni; Beerenwinkel, Niko

A recurrent adaptive mutation in the transmembrane 2B protein of an insect picorna-like virus in a nonnative host.

在非原生宿主中,昆虫小RNA样病毒的跨膜2B蛋白中出现反复出现的适应性突变。

Lezcano Oscar M, Fuhrmann Lara, Bos Reinder T, Wang Haitao, Stevens Milou, Beerenwinkel Niko, Huynen Martijn A, van Rij Ronald P

Phylogenetic inference reveals clonal heterogeneity in circulating tumor cell clusters

系统发育推断揭示循环肿瘤细胞簇的克隆异质性

David Gremmelspacher # ,Johannes Gawron # ,Barbara M Szczerba ,Katharina Jahn ,Francesc Castro-Giner ,Jack Kuipers ,Jochen Singer ,Francesco Marass ,Ana Gvozdenovic ,Selina Budinjas ,Heike Pueschel ,Cyrill A Rentsch ,Alfred Zippelius ,Viola Heinzelmann-Schwarz ,Christian Kurzeder ,Walter Paul Weber ,Christoph Rochlitz ,Marcus Vetter ,Niko Beerenwinkel ,Nicola Aceto

Ovarian cancer metastasis to the human omentum disrupts organ homeostasis and induces fundamental tissue reprogramming.

卵巢癌转移至人类大网膜会破坏器官稳态,并诱发基本的组织重编程。

Lischetti Ulrike, Liang Ching-Yeu, Carrara Matteo, Coelho Ricardo, Hanns Antoine, Lombardo Flavio, Dondi Arthur, Goetze Sandra, Hensler Michal, Kurzeder Christian, Montavon Céline, Fucikova Jitka, Singer Franziska, Beerenwinkel Niko, Beisel Christian, Heinzelmann-Schwarz Viola, Jacob Francis

Estimated transmission dynamics of SARS-CoV-2 variants from wastewater are unbiased and robust to differential shedding.

通过废水估算的 SARS-CoV-2 变种的传播动态是无偏的,并且不受病毒脱落差异的影响

Dreifuss David, Huisman Jana S, Rusch Johannes C, Caduff Lea, Ganesanandamoorthy Pravin, Devaux Alexander J, Gan Charles, Stadler Tanja, Kohn Tamar, Ort Christoph, Beerenwinkel Niko, Julian Timothy R

DelSIEVE: cell phylogeny modeling of single nucleotide variants and deletions from single-cell DNA sequencing data

DelSIEVE:基于单细胞DNA测序数据的单核苷酸变异和缺失的细胞系统发育建模

Kang, Senbai; Borgsmüller, Nico; Valecha, Monica; Markowska, Magda; Kuipers, Jack; Beerenwinkel, Niko; Posada, David; Szczurek, Ewa

Accurate fusion transcript identification from long- and short-read isoform sequencing at bulk or single-cell resolution

利用长读长和短读长同源异构体测序,在批量或单细胞分辨率下精确鉴定融合转录本

Qian Qin ,Victoria Popic ,Kirsty Wienand ,Houlin Yu ,Emily White ,Akanksha Khorgade ,Asa Shin ,Christophe Georgescu ,Catarina D Campbell ,Arthur Dondi ,Niko Beerenwinkel ,Francisca Vazquez ,Aziz M Al'Khafaji ,Brian J Haas