日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Annotating the genome at single-nucleotide resolution with DNA foundation models

利用DNA基础模型以单核苷酸分辨率对基因组进行注释

de Almeida, Bernardo P; Dalla-Torre, Hugo; Richard, Guillaume; Blum, Christopher; Hexemer, Lorenz; Gélard, Maxence; Mendoza-Revilla, Javier; Tang, Ziqi; Marin, Frederikke I; Emms, David M; Pandey, Priyanka; Laurent, Stefan; Lopez, Marie; Laterre, Alexandre; Lang, Maren; Şahin, Uğur; Beguir, Karim; Pierrot, Thomas

Nucleotide Transformer: building and evaluating robust foundation models for human genomics

核苷酸转换器:构建和评估用于人类基因组学的稳健基础模型

Dalla-Torre, Hugo; Gonzalez, Liam; Mendoza-Revilla, Javier; Lopez Carranza, Nicolas; Grzywaczewski, Adam Henryk; Oteri, Francesco; Dallago, Christian; Trop, Evan; de Almeida, Bernardo P; Sirelkhatim, Hassan; Richard, Guillaume; Skwark, Marcin; Beguir, Karim; Lopez, Marie; Pierrot, Thomas

InstaNovo enables diffusion-powered de novo peptide sequencing in large-scale proteomics experiments.

InstaNovo 可在大规模蛋白质组学实验中实现扩散驱动的从头肽测序。

Eloff Kevin, Kalogeropoulos Konstantinos, Mabona Amandla, Morell Oliver, Catzel Rachel, Rivera-de-Torre Esperanza, Jespersen Jakob Berg, Williams Wesley, van Beljouw Sam P B, Skwark Marcin J, Laustsen Andreas Hougaard, Brouns Stan J J, Ljungars Anne, Schoof Erwin M, Van Goey Jeroen, Keller Ulrich Auf dem, Beguir Karim, Carranza Nicolas Lopez, Jenkins Timothy P

Assessing data size requirements for training generalizable sequence-based TCR specificity models via pan-allelic MHC-I point-mutation ligandome evaluation

通过泛等位基因MHC-I点突变配体组评估来评估训练可推广的基于序列的TCR特异性模型所需的数据量

Delaunay, Antoine; McGibbon, Miles; Djermani, Bachir; Gorbushin, Nikolai; Chaves García-Mascaraque, Sergio; Rayment, Isaac; Kizhvatov, Ilya; Petit, Cécile; Lang, Maren; Beguir, Karim; Sahin, Ugur; Copoiu, Liviu; Lopez Carranza, Nicolas; Tovchigrechko, Andrey

A foundational large language model for edible plant genomes

食用植物基因组的基础性大型语言模型

Mendoza-Revilla, Javier; Trop, Evan; Gonzalez, Liam; Roller, Maša; Dalla-Torre, Hugo; de Almeida, Bernardo P; Richard, Guillaume; Caton, Jonathan; Lopez Carranza, Nicolas; Skwark, Marcin; Laterre, Alex; Beguir, Karim; Pierrot, Thomas; Lopez, Marie

Early computational detection of potential high-risk SARS-CoV-2 variants

早期计算检测潜在的高风险 SARS-CoV-2 变体

Karim Beguir, Marcin J Skwark, Yunguan Fu, Thomas Pierrot, Nicolas Lopez Carranza, Alexandre Laterre, Ibtissem Kadri, Abir Korched, Anna U Lowegard, Bonny Gaby Lui, Bianca Sänger, Yunpeng Liu, Asaf Poran, Alexander Muik, Uğur Şahin