日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Conformation-aware structure prediction of antigen-recognizing immune proteins

基于构象感知的抗原识别免疫蛋白结构预测

Dreyer, Frédéric A; Ludwiczak, Jan; Martinkus, Karolis; Abanades, Brennan; Alberstein, Robert G; Kessel, Pan; Rao, Pranav; Lee, Jae Hyeon; Bonneau, Richard; Watkins, Andrew M; Seeger, Franziska

Comparative genomics of the parasite Trichomonas vaginalis reveals genes involved in spillover from birds to humans

对阴道毛滴虫的比较基因组学研究揭示了与该寄生虫从鸟类传播到人类相关的基因。

Sullivan, Steven A; Orosco, Jordan C; Callejas-Hernández, Francisco; Blow, Frances; Lee, Hayan; Ranallo-Benavidez, T Rhyker; Peters, Andrew; Raidal, Shane R; Girard, Yvette A; Johnson, Christine K; Rogers, Krysta H; Gerhold, Richard; Mangelson, Hayley; Liachko, Ivan; Srivastava, Harsh; Chandler, Chris; Berenberg, Daniel; Bonneau, Richard A; Huang, Po-Jung; Yeh, Yuan-Ming; Lee, Chi-Ching; Liu, Hsuan; Chen, Ting-Wen; Tang, Petrus; Chiu, Cheng-Hsun; Schatz, Michael C; Carlton, Jane M

Tokenized and continuous embedding compressions of protein sequence and structure

蛋白质序列和结构的标记化和连续嵌入压缩

Lu, Amy X; Yan, Wilson; Yang, Kevin K; Gligorijevic, Vladimir; Cho, Kyunghyun; Abbeel, Pieter; Bonneau, Richard; Frey, Nathan C

Distinct Cellular Phenotypes of Language and Executive Decline in Amyotrophic Lateral Sclerosis

肌萎缩侧索硬化症中语言和执行功能衰退的不同细胞表型

Petrescu, Joana; Roque, Cláudio Gouveia; Jackson, Christopher A; Daly, Aidan; Kang, Kristy; Casel, Obadele; Leung, Matthew; Reilly, Luke; Eschbach, Jacqueline; McDade, Karina; Gregory, Jenna M; Bonneau, Richard; Smith, Colin; Phatnani, Hemali

PlasmoFP: leveraging deep learning to predict protein function of uncharacterized proteins across the malaria parasite genus

PlasmoFP:利用深度学习预测疟原虫属中未表征蛋白质的蛋白质功能

Srivastava, Harsh R; Berenberg, Daniel; Qassab, Omar; Wang, Ziyi; Bonneau, Richard; Carlton, Jane M

deepNGS navigator: exploring antibody NGS datasets using deep contrastive learning

deepNGS navigator:利用深度对比学习探索抗体NGS数据集

MohammadiPeyhani, Homa; Lee, Edith; Bonneau, Richard; Gligorijevic, Vladimir; Lee, Jae Hyeon

Protein remote homology detection and structural alignment using deep learning

利用深度学习进行蛋白质远程同源性检测和结构比对

Hamamsy, Tymor; Morton, James T; Blackwell, Robert; Berenberg, Daniel; Carriero, Nicholas; Gligorijevic, Vladimir; Strauss, Charlie E M; Leman, Julia Koehler; Cho, Kyunghyun; Bonneau, Richard

OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization

OpenFold:重新训练 AlphaFold2 为其学习机制和泛化能力提供了新的见解

Ahdritz, Gustaf; Bouatta, Nazim; Floristean, Christina; Kadyan, Sachin; Xia, Qinghui; Gerecke, William; O'Donnell, Timothy J; Berenberg, Daniel; Fisk, Ian; Zanichelli, Niccolò; Zhang, Bo; Nowaczynski, Arkadiusz; Wang, Bei; Stepniewska-Dziubinska, Marta M; Zhang, Shang; Ojewole, Adegoke; Guney, Murat Efe; Biderman, Stella; Watkins, Andrew M; Ra, Stephen; Lorenzo, Pablo Ribalta; Nivon, Lucas; Weitzner, Brian; Ban, Yih-En Andrew; Chen, Shiyang; Zhang, Minjia; Li, Conglong; Song, Shuaiwen Leon; He, Yuxiong; Sorger, Peter K; Mostaque, Emad; Zhang, Zhao; Bonneau, Richard; AlQuraishi, Mohammed

Analytical challenges in omics research on asthma and allergy: A National Institute of Allergy and Infectious Diseases workshop

哮喘和过敏组学研究中的分析挑战:美国国家过敏症和传染病研究所研讨会

Bunyavanich, Supinda; Becker, Patrice M; Altman, Matthew C; Lasky-Su, Jessica; Ober, Carole; Zengler, Karsten; Berdyshev, Evgeny; Bonneau, Richard; Chatila, Talal; Chatterjee, Nilanjan; Chung, Kian Fan; Cutcliffe, Colleen; Davidson, Wendy; Dong, Gang; Fang, Gang; Fulkerson, Patricia; Himes, Blanca E; Liang, Liming; Mathias, Rasika A; Ogino, Shuji; Petrosino, Joseph; Price, Nathan D; Schadt, Eric; Schofield, James; Seibold, Max A; Steen, Hanno; Wheatley, Lisa; Zhang, Hongmei; Togias, Alkis; Hasegawa, Kohei

Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference

基于转录因子流形的结构预嵌入方法能够构建透明的基因调控网络模型架构,并推断其潜在活性。

Tjärnberg, Andreas; Beheler-Amass, Maggie; Jackson, Christopher A; Christiaen, Lionel A; Gresham, David; Bonneau, Richard