日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation

对8个实验室和野生小鼠品系的8种组织进行系统性的细胞类型解析转录组分析,揭示了整体和局部表达变异。

Rebboah, Elisabeth; Weber, Ryan; Abdollahzadeh, Elnaz; Swarna, Nikhila; Sullivan, Delaney K; Trout, Diane; Reese, Fairlie; Liang, Heidi Yahan; Filimban, Ghassan; Mahdipoor, Parvin; Duffield, Margaret; Mojaverzargar, Romina; Taghizadeh, Erisa; Fattahi, Negar; Mojgani, Negar; Zhang, Haoran; Loving, Rebekah K; Carilli, Maria; Booeshaghi, A Sina; Kawauchi, Shimako; Hallgrímsdóttir, Ingileif B; Williams, Brian A; MacGregor, Grant R; Pachter, Lior; Wold, Barbara J; Mortazavi, Ali

Characterization of spatial homogeneous regions in tissues with concordex

利用 Concordex 对组织中的空间均质区域进行表征

Jackson, Kayla C; Booeshaghi, A Sina; Gálvez-Merchán, Ángel; Moses, Lambda; Chari, Tara; Kim, Alexandra; Hosten-Mittermaier, Orhan; Pachter, Lior

Single-Nucleus Analysis of Human White Adipose Tissue Reveals Adipocyte Subsets with Distinct Metabolic Profiles

人类白色脂肪组织单核分析揭示具有不同代谢特征的脂肪细胞亚群

Efthymiou, Vissarion; Ghosh, Adhideb; Kodani, Sean D; Caubit, Xavier; Fasano, Laurent; Ali, Waqar; Poulos, Lindsay S; Camara, Henrique; Gupta, Anushka; Belaidouni, Yasmine; Booeshaghi, A Sina; Yang, Shiyi; Rastogi, Ruchir; Shamsi, Farnaz; Vernon, Ashley; Streets, Aaron; Tseng, Yu-Hua; Patti, Mary Elizabeth

Determining gene specificity from multivariate single-cell RNA sequencing data

利用多变量单细胞RNA测序数据确定基因特异性

Swarna, Nikhila P; Booeshaghi, A Sina; Rebboah, Elisabeth; Gordon, M Grace; Kathail, Pooja; Li, Taibo; Alvarez, Marcus; Ye, Chun Jimmie; Wold, Barbara; Mortazavi, Ali; Pachter, Lior

Quantifying orthogonal barcodes for sequence census assays

量化正交条形码以进行序列普查分析

Booeshaghi, A Sina; Min, Kyung Hoi Joseph; Gehring, Jase; Pachter, Lior

kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq

kallisto、bustools 和 kb-python 用于量化批量、单细胞和单核 RNA 测序数据。

Sullivan, Delaney K; Min, Kyung Hoi Joseph; Hjörleifsson, Kristján Eldjárn; Luebbert, Laura; Holley, Guillaume; Moses, Lambda; Gustafsson, Johan; Bray, Nicolas L; Pimentel, Harold; Booeshaghi, A Sina; Melsted, Páll; Pachter, Lior

The impact of package selection and versioning on single-cell RNA-seq analysis

软件包选择和版本控制对单细胞RNA测序分析的影响

Rich, Joseph M; Moses, Lambda; Einarsson, Pétur Helgi; Jackson, Kayla; Luebbert, Laura; Booeshaghi, A Sina; Antonsson, Sindri; Sullivan, Delaney K; Bray, Nicolas; Melsted, Páll; Pachter, Lior

Author Correction: Principles of open source bioinstrumentation applied to the poseidon syringe pump system

作者更正:开源生物仪器原理在波塞冬注射泵系统中的应用

Booeshaghi, A Sina; Beltrame, Eduardo da Veiga; Bannon, Dylan; Gehring, Jase; Pachter, Lior

Voyager: exploratory single-cell genomics data analysis with geospatial statistics

Voyager:利用地理空间统计进行探索性单细胞基因组学数据分析

Moses, Lambda; Einarsson, Pétur Helgi; Jackson, Kayla; Luebbert, Laura; Booeshaghi, A Sina; Antonsson, Sindri; Bray, Nicolas; Melsted, Páll; Pachter, Lior

Universal preprocessing of single-cell genomics data

单细胞基因组学数据的通用预处理

Booeshaghi, A Sina; Sullivan, Delaney K; Pachter, Lior