日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Critical Assessment of Metagenome Interpretation: the second round of challenges

宏基因组解读的关键评估:第二轮挑战

Meyer, Fernando; Fritz, Adrian; Deng, Zhi-Luo; Koslicki, David; Lesker, Till Robin; Gurevich, Alexey; Robertson, Gary; Alser, Mohammed; Antipov, Dmitry; Beghini, Francesco; Bertrand, Denis; Brito, Jaqueline J; Brown, C Titus; Buchmann, Jan; Buluç, Aydin; Chen, Bo; Chikhi, Rayan; Clausen, Philip T L C; Cristian, Alexandru; Dabrowski, Piotr Wojciech; Darling, Aaron E; Egan, Rob; Eskin, Eleazar; Georganas, Evangelos; Goltsman, Eugene; Gray, Melissa A; Hansen, Lars Hestbjerg; Hofmeyr, Steven; Huang, Pingqin; Irber, Luiz; Jia, Huijue; Jørgensen, Tue Sparholt; Kieser, Silas D; Klemetsen, Terje; Kola, Axel; Kolmogorov, Mikhail; Korobeynikov, Anton; Kwan, Jason; LaPierre, Nathan; Lemaitre, Claire; Li, Chenhao; Limasset, Antoine; Malcher-Miranda, Fabio; Mangul, Serghei; Marcelino, Vanessa R; Marchet, Camille; Marijon, Pierre; Meleshko, Dmitry; Mende, Daniel R; Milanese, Alessio; Nagarajan, Niranjan; Nissen, Jakob; Nurk, Sergey; Oliker, Leonid; Paoli, Lucas; Peterlongo, Pierre; Piro, Vitor C; Porter, Jacob S; Rasmussen, Simon; Rees, Evan R; Reinert, Knut; Renard, Bernhard; Robertsen, Espen Mikal; Rosen, Gail L; Ruscheweyh, Hans-Joachim; Sarwal, Varuni; Segata, Nicola; Seiler, Enrico; Shi, Lizhen; Sun, Fengzhu; Sunagawa, Shinichi; Sørensen, Søren Johannes; Thomas, Ashleigh; Tong, Chengxuan; Trajkovski, Mirko; Tremblay, Julien; Uritskiy, Gherman; Vicedomini, Riccardo; Wang, Zhengyang; Wang, Ziye; Wang, Zhong; Warren, Andrew; Willassen, Nils Peder; Yelick, Katherine; You, Ronghui; Zeller, Georg; Zhao, Zhengqiao; Zhu, Shanfeng; Zhu, Jie; Garrido-Oter, Ruben; Gastmeier, Petra; Hacquard, Stephane; Häußler, Susanne; Khaledi, Ariane; Maechler, Friederike; Mesny, Fantin; Radutoiu, Simona; Schulze-Lefert, Paul; Smit, Nathiana; Strowig, Till; Bremges, Andreas; Sczyrba, Alexander; McHardy, Alice Carolyn

Haploflow: strain-resolved de novo assembly of viral genomes

Haploflow:病毒基因组的毒株解析从头组装

Fritz, Adrian; Bremges, Andreas; Deng, Zhi-Luo; Lesker, Till Robin; Götting, Jasper; Ganzenmueller, Tina; Sczyrba, Alexander; Dilthey, Alexander; Klawonn, Frank; McHardy, Alice Carolyn

Haploflow: Strain-resolved de novo assembly of viral genomes

Haploflow:病毒基因组的毒株解析从头组装

Fritz, A; Bremges, A; Deng, Z-L; Lesker, T-R; Götting, J; Ganzenmüller, T; Sczyrba, A; Dilthey, A; Klawonn, F; McHardy, A C

Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning-enabled molecular diagnostics

利用机器学习分子诊断技术预测铜绿假单胞菌的抗菌素耐药性

Khaledi, Ariane; Weimann, Aaron; Schniederjans, Monika; Asgari, Ehsaneddin; Kuo, Tzu-Hao; Oliver, Antonio; Cabot, Gabriel; Kola, Axel; Gastmeier, Petra; Hogardt, Michael; Jonas, Daniel; Mofrad, Mohammad Rk; Bremges, Andreas; McHardy, Alice C; Häussler, Susanne

CAMITAX: Taxon labels for microbial genomes

CAMITAX:微生物基因组分类标签

Bremges, Andreas; Fritz, Adrian; McHardy, Alice C

Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants

针对嗜温和嗜热沼气厂特定分类群的靶向原位宏转录组学研究

Stolze, Yvonne; Bremges, Andreas; Maus, Irena; Pühler, Alfred; Sczyrba, Alexander; Schlüter, Andreas

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software

宏基因组解读的关键评估——宏基因组学软件的基准测试

Sczyrba, Alexander; Hofmann, Peter; Belmann, Peter; Koslicki, David; Janssen, Stefan; Dröge, Johannes; Gregor, Ivan; Majda, Stephan; Fiedler, Jessika; Dahms, Eik; Bremges, Andreas; Fritz, Adrian; Garrido-Oter, Ruben; Jørgensen, Tue Sparholt; Shapiro, Nicole; Blood, Philip D; Gurevich, Alexey; Bai, Yang; Turaev, Dmitrij; DeMaere, Matthew Z; Chikhi, Rayan; Nagarajan, Niranjan; Quince, Christopher; Meyer, Fernando; Balvočiūtė, Monika; Hansen, Lars Hestbjerg; Sørensen, Søren J; Chia, Burton K H; Denis, Bertrand; Froula, Jeff L; Wang, Zhong; Egan, Robert; Don Kang, Dongwan; Cook, Jeffrey J; Deltel, Charles; Beckstette, Michael; Lemaitre, Claire; Peterlongo, Pierre; Rizk, Guillaume; Lavenier, Dominique; Wu, Yu-Wei; Singer, Steven W; Jain, Chirag; Strous, Marc; Klingenberg, Heiner; Meinicke, Peter; Barton, Michael D; Lingner, Thomas; Lin, Hsin-Hung; Liao, Yu-Chieh; Silva, Genivaldo Gueiros Z; Cuevas, Daniel A; Edwards, Robert A; Saha, Surya; Piro, Vitor C; Renard, Bernhard Y; Pop, Mihai; Klenk, Hans-Peter; Göker, Markus; Kyrpides, Nikos C; Woyke, Tanja; Vorholt, Julia A; Schulze-Lefert, Paul; Rubin, Edward M; Darling, Aaron E; Rattei, Thomas; McHardy, Alice C

Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes

沼气生产微生物组中细菌和古菌分离株的基因组学和流行情况

Maus, Irena; Bremges, Andreas; Stolze, Yvonne; Hahnke, Sarah; Cibis, Katharina G; Koeck, Daniela E; Kim, Yong S; Kreubel, Jana; Hassa, Julia; Wibberg, Daniel; Weimann, Aaron; Off, Sandra; Stantscheff, Robbin; Zverlov, Vladimir V; Schwarz, Wolfgang H; König, Helmut; Liebl, Wolfgang; Scherer, Paul; McHardy, Alice C; Sczyrba, Alexander; Klocke, Michael; Pühler, Alfred; Schlüter, Andreas

Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates

通过宏基因组和宏转录组分析以及细菌和古细菌分离物的表征揭示嗜热沼气厂的微生物组

Irena Maus, Daniela E Koeck, Katharina G Cibis, Sarah Hahnke, Yong S Kim, Thomas Langer, Jana Kreubel, Marcel Erhard, Andreas Bremges, Sandra Off, Yvonne Stolze, Sebastian Jaenicke, Alexander Goesmann, Alexander Sczyrba, Paul Scherer, Helmut König, Wolfgang H Schwarz, Vladimir V Zverlov, Wolfgang Li

From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer

从基因组到表型:Traitar,微生物性状分析器

Weimann, Aaron; Mooren, Kyra; Frank, Jeremy; Pope, Phillip B; Bremges, Andreas; McHardy, Alice C