日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Following the Committor Flow: A Data-Driven Discovery of Transition Pathways

追踪提交者流程:基于数据的转换路径发现

Giuseppe Chen, Cheng; Tang, Chenyu; Megías, Alberto; Talmazan, Radu A; Contreras Arredondo, Sergio; Roux, Benoît; Chipot, Christophe

The need to implement FAIR principles in biomolecular simulations

在生物分子模拟中实施 FAIR 原则的必要性

Amaro, Rommie E; Åqvist, Johan; Bahar, Ivet; Battistini, Federica; Bellaiche, Adam; Beltran, Daniel; Biggin, Philip C; Bonomi, Massimiliano; Bowman, Gregory R; Bryce, Richard A; Bussi, Giovanni; Carloni, Paolo; Case, David A; Cavalli, Andrea; Chang, Chia-En A; Cheatham, Thomas E 3rd; Cheung, Margaret S; Chipot, Christophe; Chong, Lillian T; Choudhary, Preeti; Cisneros, G Andres; Clementi, Cecilia; Collepardo-Guevara, Rosana; Coveney, Peter; Covino, Roberto; Crawford, T Daniel; Dal Peraro, Matteo; de Groot, Bert L; Delemotte, Lucie; De Vivo, Marco; Essex, Jonathan W; Fraternali, Franca; Gao, Jiali; Gelpí, Josep Ll; Gervasio, Francesco L; González-Nilo, Fernando D; Grubmüller, Helmut; Guenza, Marina G; Guzman, Horacio V; Harris, Sarah; Head-Gordon, Teresa; Hernandez, Rigoberto; Hospital, Adam; Huang, Niu; Huang, Xuhui; Hummer, Gerhard; Iglesias-Fernández, Javier; Jensen, Jan H; Jha, Shantenu; Jiao, Wanting; Jorgensen, William L; Kamerlin, Shina C L; Khalid, Syma; Laughton, Charles; Levitt, Michael; Limongelli, Vittorio; Lindahl, Erik; Lindorff-Larsen, Kresten; Loverde, Sharon; Lundborg, Magnus; Luo, Yun L; Luque, F Javier; Lynch, Charlotte I; MacKerell, Alexander D Jr; Magistrato, Alessandra; Marrink, Siewert J; Martin, Hugh; McCammon, J Andrew; Merz, Kenneth; Moliner, Vicent; Mulholland, Adrian J; Murad, Sohail; Naganathan, Athi N; Nangia, Shikha; Noe, Frank; Noy, Agnes; Oláh, Julianna; O'Mara, Megan L; Ondrechen, Mary Jo; Onuchic, Jose N; Onufriev, Alexey; Osuna, Sílvia; Palermo, Giulia; Panchenko, Anna R; Pantano, Sergio; Parish, Carol; Parrinello, Michele; Perez, Alberto; Perez-Acle, Tomas; Perilla, Juan R; Pettitt, B Montgomery; Pietropaolo, Adriana; Piquemal, Jean-Philip; Poma, Adolfo B; Praprotnik, Matej; Ramos, Maria J; Ren, Pengyu; Reuter, Nathalie; Roitberg, Adrian; Rosta, Edina; Rovira, Carme; Roux, Benoit; Rothlisberger, Ursula; Sanbonmatsu, Karissa Y; Schlick, Tamar; Shaytan, Alexey K; Simmerling, Carlos; Smith, Jeremy C; Sugita, Yuji; Świderek, Katarzyna; Taiji, Makoto; Tao, Peng; Tieleman, D Peter; Tikhonova, Irina G; Tirado-Rives, Julian; Tuñón, Iñaki; van der Kamp, Marc W; van der Spoel, David; Velankar, Sameer; Voth, Gregory A; Wade, Rebecca; Warshel, Ariel; Welborn, Valerie Vaissier; Wetmore, Stacey D; Wheeler, Travis J; Wong, Chung F; Yang, Lee-Wei; Zacharias, Martin; Orozco, Modesto

Iterative variational learning of committor-consistent transition pathways using artificial neural networks

利用人工神经网络进行迭代变分学习,以寻找与承诺者一致的转换路径

Megías, Alberto; Contreras Arredondo, Sergio; Chen, Cheng Giuseppe; Tang, Chenyu; Roux, Benoît; Chipot, Christophe

Structural dynamics and permeability of the TRPV3 pentamer

TRPV3五聚体的结构动力学和渗透性

Lansky, Shifra; Wang, Zhaokun; Clarke, Oliver B; Chipot, Christophe; Scheuring, Simon

Development of Coarse-Grained Lipid Force Fields Based on a Graph Neural Network

基于图神经网络的粗粒化脂质力场的开发

Liao, Zhenyu; Si, Ting; Wang, Tairan; Kai, Ji-Jung; Chipot, Christophe; Fan, Jun

GPU-Accelerated Implementation of Constant-pH Molecular Dynamics in NAMD

在NAMD中利用GPU加速实现恒定pH分子动力学模拟

Moe, Sarah; Chipot, Christophe; Roux, Benoît

Molecular self-assembly mediates the flocculation activity of benzimidazole derivatives against E. coli

分子自组装介导苯并咪唑衍生物对大肠杆菌的絮凝活性

Drewek, Isalyne; Pietka, Aurélie; Tran, Thi Quynh; Blazhynska, Marharyta; Jeništova, Adéla; Chipot, Christophe; Barth, Andreas; Surin, Mathieu; Leclère, Philippe; Wattiez, Ruddy; Muller, Robert N; Stanicki, Dimitri; Laurent, Sophie

Simulating Biomolecules with the Variable Protonation State: A Tutorial for Constant-pH Molecular Dynamics in NAMD

利用NAMD模拟具有可变质子化状态的生物分子:恒定pH分子动力学教程

Moe, Sarah; Radak, Brian K; Chipot, Christophe; Roux, Benoît

Probing Passive Permeation of Tetracycline: Are Simulations Ready for beyond-Rule-of-Five Drug Permeability Calculation?

探究四环素的被动渗透:模拟是否已准备好进行超越五规则的药物渗透性计算?

Qi, Yajing; Chipot, Christophe; Wang, Yi

The String Method with Swarms of Trajectories: A Tutorial for Free-Energy Calculations Along a Zero-Drift Pathway

利用轨迹群的弦方法:沿零漂移路径的自由能计算教程

Tang, Chenyu; Chen, Haochuan; Tajkhorshid, Emad; Roux, Benoît; Chipot, Christophe