日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Precision proteogenomics reveals pan-cancer impact of germline variants

精准蛋白质组学揭示种系变异对泛癌的影响

Martins Rodrigues, Fernanda; Terekhanova, Nadezhda V; Imbach, Kathleen J; Clauser, Karl R; Esai Selvan, Myvizhi; Mendizabal, Isabel; Geffen, Yifat; Akiyama, Yo; Maynard, Myranda; Yaron, Tomer M; Li, Yize; Cao, Song; Storrs, Erik P; Gonda, Olivia S; Gaite-Reguero, Adrian; Govindan, Akshay; Kawaler, Emily A; Wyczalkowski, Matthew A; Klein, Robert J; Turhan, Berk; Krug, Karsten; Mani, D R; Leprevost, Felipe da Veiga; Nesvizhskii, Alexey I; Carr, Steven A; Fenyö, David; Gillette, Michael A; Colaprico, Antonio; Iavarone, Antonio; Robles, Ana I; Huang, Kuan-Lin; Kumar-Sinha, Chandan; Aguet, François; Lazar, Alexander J; Cantley, Lewis C; Marigorta, Urko M; Gümüş, Zeynep H; Bailey, Matthew H; Getz, Gad; Porta-Pardo, Eduard; Ding, Li

Proteomic-based stemness score measures oncogenic dedifferentiation and enables the identification of druggable targets.

基于蛋白质组学的干性评分衡量致癌去分化,并能够识别可成药靶点

Kołodziejczak-Guglas Iga, Simões Renan L S, de Souza Santos Emerson, Demicco Elizabeth G, Lazcano Segura Rossana N, Ma Weiping, Wang Pei, Geffen Yifat, Storrs Erik, Petralia Francesca, Colaprico Antonio, da Veiga Leprevost Felipe, Pugliese Pietro, Ceccarelli Michele, Noushmehr Houtan, Nesvizhskii Alexey I, Kamińska Bożena, Priebe Waldemar, Lubiński Jan, Zhang Bing, Lazar Alexander J, Kurzawa Paweł, Mesri Mehdi, Robles Ana I, Ding Li, Malta Tathiane M, Wiznerowicz Maciej

Proteogenomic data and resources for pan-cancer analysis

用于泛癌分析的蛋白质基因组学数据和资源

Li, Yize; Dou, Yongchao; Da Veiga Leprevost, Felipe; Geffen, Yifat; Calinawan, Anna P; Aguet, François; Akiyama, Yo; Anand, Shankara; Birger, Chet; Cao, Song; Chaudhary, Rekha; Chilappagari, Padmini; Cieslik, Marcin; Colaprico, Antonio; Zhou, Daniel Cui; Day, Corbin; Domagalski, Marcin J; Esai Selvan, Myvizhi; Fenyö, David; Foltz, Steven M; Francis, Alicia; Gonzalez-Robles, Tania; Gümüş, Zeynep H; Heiman, David; Holck, Michael; Hong, Runyu; Hu, Yingwei; Jaehnig, Eric J; Ji, Jiayi; Jiang, Wen; Katsnelson, Lizabeth; Ketchum, Karen A; Klein, Robert J; Lei, Jonathan T; Liang, Wen-Wei; Liao, Yuxing; Lindgren, Caleb M; Ma, Weiping; Ma, Lei; MacCoss, Michael J; Martins Rodrigues, Fernanda; McKerrow, Wilson; Nguyen, Ngoc; Oldroyd, Robert; Pilozzi, Alexander; Pugliese, Pietro; Reva, Boris; Rudnick, Paul; Ruggles, Kelly V; Rykunov, Dmitry; Savage, Sara R; Schnaubelt, Michael; Schraink, Tobias; Shi, Zhiao; Singhal, Deepak; Song, Xiaoyu; Storrs, Erik; Terekhanova, Nadezhda V; Thangudu, Ratna R; Thiagarajan, Mathangi; Wang, Liang-Bo; Wang, Joshua M; Wang, Ying; Wen, Bo; Wu, Yige; Wyczalkowski, Matthew A; Xin, Yi; Yao, Lijun; Yi, Xinpei; Zhang, Hui; Zhang, Qing; Zuhl, Maya; Getz, Gad; Ding, Li; Nesvizhskii, Alexey I; Wang, Pei; Robles, Ana I; Zhang, Bing; Payne, Samuel H

Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.

从蛋白质基因组学角度深入了解 HPV 阴性头颈部鳞状细胞癌的生物学和治疗方法

Huang Chen, Chen Lijun, Savage Sara R, Eguez Rodrigo Vargas, Dou Yongchao, Li Yize, da Veiga Leprevost Felipe, Jaehnig Eric J, Lei Jonathan T, Wen Bo, Schnaubelt Michael, Krug Karsten, Song Xiaoyu, Cieślik Marcin, Chang Hui-Yin, Wyczalkowski Matthew A, Li Kai, Colaprico Antonio, Li Qing Kay, Clark David J, Hu Yingwei, Cao Liwei, Pan Jianbo, Wang Yuefan, Cho Kyung-Cho, Shi Zhiao, Liao Yuxing, Jiang Wen, Anurag Meenakshi, Ji Jiayi, Yoo Seungyeul, Zhou Daniel Cui, Liang Wen-Wei, Wendl Michael, Vats Pankaj, Carr Steven A, Mani D R, Zhang Zhen, Qian Jiang, Chen Xi S, Pico Alexander R, Wang Pei, Chinnaiyan Arul M, Ketchum Karen A, Kinsinger Christopher R, Robles Ana I, An Eunkyung, Hiltke Tara, Mesri Mehdi, Thiagarajan Mathangi, Weaver Alissa M, Sikora Andrew G, Lubiński Jan, Wierzbicka Małgorzata, Wiznerowicz Maciej, Satpathy Shankha, Gillette Michael A, Miles George, Ellis Matthew J, Omenn Gilbert S, Rodriguez Henry, Boja Emily S, Dhanasekaran Saravana M, Ding Li, Nesvizhskii Alexey I, El-Naggar Adel K, Chan Daniel W, Zhang Hui, Zhang Bing

LR Hunting: A Random Forest Based Cell-Cell Interaction Discovery Method for Single-Cell Gene Expression Data

LR Hunting:一种基于随机森林的单细胞基因表达数据细胞间相互作用发现方法

Lu, Min; Sha, Yifan; Silva, Tiago C; Colaprico, Antonio; Sun, Xiaodian; Ban, Yuguang; Wang, Lily; Lehmann, Brian D; Chen, X Steven

PathwayMultiomics: An R Package for Efficient Integrative Analysis of Multi-Omics Datasets With Matched or Un-matched Samples

PathwayMultiomics:一个用于高效整合分析匹配或不匹配样本的多组学数据集的 R 软件包

Odom, Gabriel J; Colaprico, Antonio; Silva, Tiago C; Chen, X Steven; Wang, Lily

Interpreting pathways to discover cancer driver genes with Moonlight

利用 Moonlight 解读通路以发现癌症驱动基因

Colaprico, Antonio; Olsen, Catharina; Bailey, Matthew H; Odom, Gabriel J; Terkelsen, Thilde; Silva, Tiago C; Olsen, André V; Cantini, Laura; Zinovyev, Andrei; Barillot, Emmanuel; Noushmehr, Houtan; Bertoli, Gloria; Castiglioni, Isabella; Cava, Claudia; Bontempi, Gianluca; Chen, Xi Steven; Papaleo, Elena

PathwayPCA: an R/Bioconductor Package for Pathway Based Integrative Analysis of Multi-Omics Data

PathwayPCA:一个用于基于通路的多组学数据整合分析的 R/Bioconductor 软件包

Odom, Gabriel J; Ban, Yuguang; Colaprico, Antonio; Liu, Lizhong; Silva, Tiago Chedraoui; Sun, Xiaodian; Pico, Alexander R; Zhang, Bing; Wang, Lily; Chen, Xi

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.

透明细胞肾细胞癌的整合蛋白质基因组学特征分析

Clark David J, Dhanasekaran Saravana M, Petralia Francesca, Pan Jianbo, Song Xiaoyu, Hu Yingwei, da Veiga Leprevost Felipe, Reva Boris, Lih Tung-Shing M, Chang Hui-Yin, Ma Weiping, Huang Chen, Ricketts Christopher J, Chen Lijun, Krek Azra, Li Yize, Rykunov Dmitry, Li Qing Kay, Chen Lin S, Ozbek Umut, Vasaikar Suhas, Wu Yige, Yoo Seungyeul, Chowdhury Shrabanti, Wyczalkowski Matthew A, Ji Jiayi, Schnaubelt Michael, Kong Andy, Sethuraman Sunantha, Avtonomov Dmitry M, Ao Minghui, Colaprico Antonio, Cao Song, Cho Kyung-Cho, Kalayci Selim, Ma Shiyong, Liu Wenke, Ruggles Kelly, Calinawan Anna, Gümüş Zeynep H, Geiszler Daniel, Kawaler Emily, Teo Guo Ci, Wen Bo, Zhang Yuping, Keegan Sarah, Li Kai, Chen Feng, Edwards Nathan, Pierorazio Phillip M, Chen Xi Steven, Pavlovich Christian P, Hakimi A Ari, Brominski Gabriel, Hsieh James J, Antczak Andrzej, Omelchenko Tatiana, Lubinski Jan, Wiznerowicz Maciej, Linehan W Marston, Kinsinger Christopher R, Thiagarajan Mathangi, Boja Emily S, Mesri Mehdi, Hiltke Tara, Robles Ana I, Rodriguez Henry, Qian Jiang, Fenyö David, Zhang Bing, Ding Li, Schadt Eric, Chinnaiyan Arul M, Zhang Zhen, Omenn Gilbert S, Cieslik Marcin, Chan Daniel W, Nesvizhskii Alexey I, Wang Pei, Zhang Hui

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx

TCGAbiolinks软件包新增功能,用于研究和整合来自GDC和GTEx的癌症数据。

Mounir, Mohamed; Lucchetta, Marta; Silva, Tiago C; Olsen, Catharina; Bontempi, Gianluca; Chen, Xi; Noushmehr, Houtan; Colaprico, Antonio; Papaleo, Elena