日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Illumina complete long read assay yields contiguous bacterial genomes from human gut metagenomes

Illumina全长读长测序技术可从人类肠道宏基因组中获得连续的细菌基因组。

Maghini, Dylan G; Kiguchi, Yuya; Darling, Aaron E; Monahan, Leigh G; Halpern, Aaron L; Burke, Catherine M; Jaeger, Erich; Statham, Aaron; Truong, Tiffany; Ying, Kevin; Bruinsma, Stephen P; Schroth, Gary P; Bhatt, Ami S

Xanthomonas rydalmerensis sp. nov., a non-pathogenic member of Group 1 Xanthomonas

Xanthomonas rydalmerensis sp. nov.,一种非致病性的1组黄单胞菌属成员

McKnight, Daniel J E; Wong-Bajracharya, Johanna; Okoh, Efenaide B; Snijders, Fridtjof; Lidbetter, Fiona; Webster, John; Haughton, Mathew; Darling, Aaron E; Djordjevic, Steven P; Bogema, Daniel R; Chapman, Toni A

Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics

利用宏转录组学扩展澳大利亚育肥牛(患有和未患有呼吸道疾病)的呼吸道感染组范围

Brito, Barbara P; Frost, Melinda J; Anantanawat, Kay; Jaya, Frederick; Batterham, Tony; Djordjevic, Steven P; Chang, Wei-Shan; Holmes, Edward C; Darling, Aaron E; Kirkland, Peter D

Evaluation of recombination detection methods for viral sequencing

病毒测序重组检测方法的评估

Jaya, Frederick R; Brito, Barbara P; Darling, Aaron E

Rhometa: Population recombination rate estimation from metagenomic read datasets

Rhometa:基于宏基因组读取数据集的群体重组率估计

Krishnan, Sidaswar; DeMaere, Matthew Z; Beck, Dominik; Ostrowski, Martin; Seymour, Justin R; Darling, Aaron E

Critical Assessment of Metagenome Interpretation: the second round of challenges

宏基因组解读的关键评估:第二轮挑战

Meyer, Fernando; Fritz, Adrian; Deng, Zhi-Luo; Koslicki, David; Lesker, Till Robin; Gurevich, Alexey; Robertson, Gary; Alser, Mohammed; Antipov, Dmitry; Beghini, Francesco; Bertrand, Denis; Brito, Jaqueline J; Brown, C Titus; Buchmann, Jan; Buluç, Aydin; Chen, Bo; Chikhi, Rayan; Clausen, Philip T L C; Cristian, Alexandru; Dabrowski, Piotr Wojciech; Darling, Aaron E; Egan, Rob; Eskin, Eleazar; Georganas, Evangelos; Goltsman, Eugene; Gray, Melissa A; Hansen, Lars Hestbjerg; Hofmeyr, Steven; Huang, Pingqin; Irber, Luiz; Jia, Huijue; Jørgensen, Tue Sparholt; Kieser, Silas D; Klemetsen, Terje; Kola, Axel; Kolmogorov, Mikhail; Korobeynikov, Anton; Kwan, Jason; LaPierre, Nathan; Lemaitre, Claire; Li, Chenhao; Limasset, Antoine; Malcher-Miranda, Fabio; Mangul, Serghei; Marcelino, Vanessa R; Marchet, Camille; Marijon, Pierre; Meleshko, Dmitry; Mende, Daniel R; Milanese, Alessio; Nagarajan, Niranjan; Nissen, Jakob; Nurk, Sergey; Oliker, Leonid; Paoli, Lucas; Peterlongo, Pierre; Piro, Vitor C; Porter, Jacob S; Rasmussen, Simon; Rees, Evan R; Reinert, Knut; Renard, Bernhard; Robertsen, Espen Mikal; Rosen, Gail L; Ruscheweyh, Hans-Joachim; Sarwal, Varuni; Segata, Nicola; Seiler, Enrico; Shi, Lizhen; Sun, Fengzhu; Sunagawa, Shinichi; Sørensen, Søren Johannes; Thomas, Ashleigh; Tong, Chengxuan; Trajkovski, Mirko; Tremblay, Julien; Uritskiy, Gherman; Vicedomini, Riccardo; Wang, Zhengyang; Wang, Ziye; Wang, Zhong; Warren, Andrew; Willassen, Nils Peder; Yelick, Katherine; You, Ronghui; Zeller, Georg; Zhao, Zhengqiao; Zhu, Shanfeng; Zhu, Jie; Garrido-Oter, Ruben; Gastmeier, Petra; Hacquard, Stephane; Häußler, Susanne; Khaledi, Ariane; Maechler, Friederike; Mesny, Fantin; Radutoiu, Simona; Schulze-Lefert, Paul; Smit, Nathiana; Strowig, Till; Bremges, Andreas; Sczyrba, Alexander; McHardy, Alice Carolyn

STRONG: metagenomics strain resolution on assembly graphs

强:基于组装图的宏基因组菌株分辨率

Quince, Christopher; Nurk, Sergey; Raguideau, Sebastien; James, Robert; Soyer, Orkun S; Summers, J Kimberly; Limasset, Antoine; Eren, A Murat; Chikhi, Rayan; Darling, Aaron E

Post-weaning shifts in microbiome composition and metabolism revealed by over 25 000 pig gut metagenome-assembled genomes

通过对超过25000个猪肠道宏基因组组装的分析,揭示了断奶后微生物组组成和代谢的变化

Gaio, Daniela; DeMaere, Matthew Z; Anantanawat, Kay; Chapman, Toni A; Djordjevic, Steven P; Darling, Aaron E

Escherichia coli ST8196 is a novel, locally evolved, and extensively drug resistant pathogenic lineage within the ST131 clonal complex

大肠杆菌ST8196是ST131克隆复合体中一种新型的、局部进化的、具有广泛耐药性的致病菌株。

Hastak, Priyanka; Fourment, Mathieu; Darling, Aaron E; Gottlieb, Thomas; Cheong, Elaine; Merlino, John; Myers, Garry S A; Djordjevic, Steven P; Roy Chowdhury, Piklu

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

BEAGLE 3:高性能统计系统发育计算库的性能、可扩展性和易用性得到提升

Ayres, Daniel L; Cummings, Michael P; Baele, Guy; Darling, Aaron E; Lewis, Paul O; Swofford, David L; Huelsenbeck, John P; Lemey, Philippe; Rambaut, Andrew; Suchard, Marc A