日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation

对8个实验室和野生小鼠品系的8种组织进行系统性的细胞类型解析转录组分析,揭示了整体和局部表达变异。

Rebboah, Elisabeth; Weber, Ryan; Abdollahzadeh, Elnaz; Swarna, Nikhila; Sullivan, Delaney K; Trout, Diane; Reese, Fairlie; Liang, Heidi Yahan; Filimban, Ghassan; Mahdipoor, Parvin; Duffield, Margaret; Mojaverzargar, Romina; Taghizadeh, Erisa; Fattahi, Negar; Mojgani, Negar; Zhang, Haoran; Loving, Rebekah K; Carilli, Maria; Booeshaghi, A Sina; Kawauchi, Shimako; Hallgrímsdóttir, Ingileif B; Williams, Brian A; MacGregor, Grant R; Pachter, Lior; Wold, Barbara J; Mortazavi, Ali

Accurate quantification of nascent and mature RNAs from single-cell and single-nucleus RNA-seq

对单细胞和单核RNA测序数据中新生和成熟RNA进行精确定量

Sullivan, Delaney K; Hjörleifsson, Kristján Eldjárn; Swarna, Nikhila P; Oakes, Conrad; Holley, Guillaume; Melsted, Páll; Pachter, Lior

Long-read sequencing transcriptome quantification with lr-kallisto

利用 lr-kallisto 进行长读长测序转录组定量分析

Loving, Rebekah K; Sullivan, Delaney K; Booeshagi, A Sina; Reese, Fairlie; Rebboah, Elisabeth; Sakr, Jasmine; Rezaie, Narges; Liang, Heidi Y; Filimban, Ghassan; Kawauchi, Shimako; Oakes, Conrad; Trout, Diane; Williams, Brian A; MacGregor, Grant; Wold, Barbara J; Mortazavi, Ali; Pachter, Lior

Pseudoassembly of k-mers

k-mer的伪组装

Sullivan, Delaney K; Boffelli, Mayuko; Pachter, Lior

Efficient and accurate detection of viral sequences at single-cell resolution reveals putative novel viruses perturbing host gene expression

高效、准确地在单细胞分辨率下检测病毒序列,揭示了可能干扰宿主基因表达的新型病毒。

Luebbert, Laura; Sullivan, Delaney K; Carilli, Maria; Hjörleifsson, Kristján Eldjárn; Winnett, Alexander Viloria; Chari, Tara; Pachter, Lior

Genome organization around nuclear speckles drives mRNA splicing efficiency

核斑点周围的基因组组织决定了 mRNA 剪接效率

Prashant Bhat, Amy Chow, Benjamin Emert, Olivia Ettlin, Sofia A Quinodoz, Mackenzie Strehle, Yodai Takei, Alex Burr, Isabel N Goronzy, Allen W Chen, Wesley Huang, Jose Lorenzo M Ferrer, Elizabeth Soehalim, Say-Tar Goh, Tara Chari, Delaney K Sullivan, Mario R Blanco, Mitchell Guttman

Nuclear to cytoplasmic transport is a druggable dependency in MYC-driven hepatocellular carcinoma

核质转运是MYC驱动的肝细胞癌中一种可药物靶向的依赖性因素。

Anja Deutzmann,Delaney K Sullivan,Renumathy Dhanasekaran,Wei Li,Xinyu Chen,Ling Tong,Wadie D Mahauad-Fernandez,John Bell,Adriane Mosley,Angela N Koehler,Yulin Li #,Dean W Felsher #

Recovery and Analysis of Bacterial Membrane Vesicle Nanoparticles from Human Plasma Using Dielectrophoresis

利用介电泳法从人血浆中回收并分析细菌膜囊泡纳米粒子

Jason P Ware, Delaney K Shea, Shelby L Nicholas, Ella A Stimson, Jessica L Riesterer, Stuart D Ibsen

kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq

kallisto、bustools 和 kb-python 用于量化批量、单细胞和单核 RNA 测序数据。

Sullivan, Delaney K; Min, Kyung Hoi Joseph; Hjörleifsson, Kristján Eldjárn; Luebbert, Laura; Holley, Guillaume; Moses, Lambda; Gustafsson, Johan; Bray, Nicolas L; Pimentel, Harold; Booeshaghi, A Sina; Melsted, Páll; Pachter, Lior

The impact of package selection and versioning on single-cell RNA-seq analysis

软件包选择和版本控制对单细胞RNA测序分析的影响

Rich, Joseph M; Moses, Lambda; Einarsson, Pétur Helgi; Jackson, Kayla; Luebbert, Laura; Booeshaghi, A Sina; Antonsson, Sindri; Sullivan, Delaney K; Bray, Nicolas; Melsted, Páll; Pachter, Lior