日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Retrieval-Augmented Language Models Enable Scalable Chemical Source Classification in Metabolomics Workflows

检索增强型语言模型可实现代谢组学工作流程中可扩展的化学物质来源分类

Rajkumar, Prajit; Tang, Runbang; Sapre, Harshada; Zemlin, Jasmine; Deleray, Victoria; Seo, Jeong In; Mohan, Siddharth; Xing, Shipei; Gouda, Harsha; El Abiead, Yasin; Tsunoda, Shirley M; Zhao, Haoqi Nina; Dorrestein, Pieter C

Antibiotic Exposure Through Human Milk Influences the Infant Gut Microbiome

通过母乳接触抗生素会影响婴儿肠道微生物群。

Kvitne, Kine Eide; Zuffa, Simone; Charron-Lamoureux, Vincent; Patan, Abubaker; Agongo, Julius; Cai, Jiaxi; Deleray, Victoria; El Abiead, Yasin; Xing, Shipei; Zemlin, Jasmine; Thomas, Sydney; Nelson, Megan R; Gant, Abigail; Ghadishah, Angelique; Lam, Anny; Ho, Benjamin; Momper, Jeremiah D; Suhandynata, Raymond T; Bertrand, Kerri; Knight, Rob; Chambers, Christina; Dorrestein, Pieter C; Tsunoda, Shirley M

Synthesis-driven reverse metabolomics reveals 3-hydroxy N-acyl amides as gut microbial molecules

合成驱动的逆向代谢组学揭示了3-羟基N-酰基酰胺是肠道微生物分子

Deleray, Victoria; Charron-Lamoureux, Vincent; Vittali, Kyle; Mannochio-Russo, Helena; Wang, Crystal X; Walker, Corinn; Zengler, Karsten; Siegel, Dionicio; Dorrestein, Pieter C

Community Curation of Microbial Metabolites Enables Biological Insights of Metabolomics Data

社区对微生物代谢物的管理有助于深入了解代谢组学数据的生物学意义

Mannochio-Russo, Helena; Gonçalves Nunes, Wilhan D; Xing, Shipei; de Oliveira, Fernanda; Caraballo-Rodríguez, Andrés Mauricio; Gomes, Paulo Wender Portal; Charron-Lamoureux, Vincent; Agongo, Julius; Avalon, Nicole E; Bui, Tammy; Cancelada, Lucia; Chevrette, Marc G; Cumsille, Andrés; de Araújo, Moysés B; De Graeve, Marilyn; Deleray, Victoria; Donia, Mohamed S; Dzveta, Mutsawashe B; El Abiead, Yasin; Ellis, Ronald J; Franklin, Donald Jr; Garg, Neha; Gouda, Harsha; Djande, Claude Y Hamany; Hiskia, Anastasia; Ho, Benjamin N; Hughes, Chambers C; Hwang, Sunghoon; Iliakopoulou, Sofia; Iudicello, Jennifer E; Jarmusch, Alan K; Kaloudis, Triantafyllos; Koester, Irina; Konkel, Robert; Koolen, Hector H F; Kvitne, Kine Eide; La Rosa, Sabina Leanti; Lam, Anny; Lamichhane, Santosh; Lephatsi, Motseoa; Letendre, Scott; Magyari, Sarolt; Mazur-Marzec, Hanna; McDonald, Daniel; Mohanty, Ipsita; Monge-Loría, Mónica; Moore, David J; Veiga, Thiago André Moura; Mulaudzi, Musiwalo S; Nephali, Lerato; Nguyen, Griffith; Orságh, Martin; Patan, Abubaker; Pluskal, Tomáš; Pope, Phillip B; de Medeiros, Lívia Soman; Stincone, Paolo; Tekel, Andrej; Thomas, Sydney; Torres, Ralph R; Tsunoda, Shirley M; Tugizimana, Fidele; van Faassen, Martijn; Vasquez-Castro, Felipe; Vitale, Giovanni A; Wagner, Berenike C; Wang, Crystal X; Zervou, Sevasti-Kiriaki; Zhao, Haoqi Nina; Zuffa, Simone; Petras, Daniel; McCall, Laura-Isobel; Knight, Rob; Wang, Mingxun; Dorrestein, Pieter C

Pan-Metabolomics Repository Mapping of the Carnitine Landscape

肉碱谱的泛代谢组学数据库映射

Mannochio-Russo, Helena; Ferreira, Patrick C; Kvitne, Kine Eide; Patan, Abubaker; Deleray, Victoria; Agongo, Julius; Gouda, Harsha; Gonçalves Nunes, Wilhan D; Xing, Shipei; Zemlin, Jasmine; van Faassen, Martijn; Reilly, Erin R; Koo, Imhoi; Patterson, Andrew D; Tsunoda, Shirley M; Wang, Mingxun; Siegel, Dionicio; Burnett, Lindsey A; Dorrestein, Pieter C

Unlocking the Bile Acid Universe: Advanced Workflows and a Multidimensional Library of 280 Unique Species.

揭开胆汁酸世界的神秘面纱:先进的工作流程和包含 280 种独特物种的多维库。

Zhang Guozhi, Vincent Emily C, Disselkoen Sadie M, Dodds James N, DuVal-Smith Quentin, Patan Abubaker, Mohanty Ipsita, Deleray Victoria, Zhang Jian, Thiessen Paul A, Bolton Evan E, Schymanski Emma L, Dorrestein Pieter C, Theriot Casey M, Baker Erin S

The microbiome diversifies long- to short-chain fatty acid-derived N-acyl lipids

微生物群落使长链脂肪酸衍生的N-酰基脂质多样化为短链脂肪酸衍生的N-酰基脂质。

Helena Mannochio-Russo ,Vincent Charron-Lamoureux ,Martijn van Faassen ,Santosh Lamichhane ,Wilhan D Gonçalves Nunes ,Victoria Deleray ,Adriana V Ayala ,Yuichiro Tanaka ,Abubaker Patan ,Kyle Vittali ,Prajit Rajkumar ,Yasin El Abiead ,Haoqi Nina Zhao ,Paulo Wender Portal Gomes ,Ipsita Mohanty ,Carlynda Lee ,Aidan Sund ,Meera Sharma ,Yuanhao Liu ,David Pattynama ,Gregory T Walker ,Grant J Norton ,Lora Khatib ,Mohammadsobhan S Andalibi ,Crystal X Wang ,Ronald J Ellis ,David J Moore ,Jennifer E Iudicello ,Donald Franklin Jr ,Scott Letendre ,Loryn Chin ,Corinn Walker ,Simone Renwick ,Jasmine Zemlin ,Michael J Meehan ,Xinyang Song ,Dennis Kasper ,Zachary Burcham ,Jane J Kim ,Sejal Kadakia ,Manuela Raffatellu ,Lars Bode ,Hiutung Chu ,Karsten Zengler ,Mingxun Wang ,Dionicio Siegel ,Rob Knight ,Pieter C Dorrestein

A guide to reverse metabolomics-a framework for big data discovery strategy

反向代谢组学指南——大数据发现策略框架

Charron-Lamoureux, Vincent; Mannochio-Russo, Helena; Lamichhane, Santosh; Xing, Shipei; Patan, Abubaker; Portal Gomes, Paulo Wender; Rajkumar, Prajit; Deleray, Victoria; Caraballo-Rodríguez, Andrés Mauricio; Chua, Kee Voon; Lee, Lye Siang; Liu, Zhao; Ching, Jianhong; Wang, Mingxun; Dorrestein, Pieter C

Enabling pan-repository reanalysis for big data science of public metabolomics data

为公共代谢组学数据的大数据科学实现跨存储库的重新分析

El Abiead, Yasin; Strobel, Michael; Payne, Thomas; Fahy, Eoin; O'Donovan, Claire; Subramamiam, Shankar; Vizcaíno, Juan Antonio; Yurekten, Ozgur; Deleray, Victoria; Zuffa, Simone; Xing, Shipei; Mannochio-Russo, Helena; Mohanty, Ipsita; Zhao, Haoqi Nina; Caraballo-Rodriguez, Andres M; P Gomes, Paulo Wender; Avalon, Nicole E; Northen, Trent R; Bowen, Benjamin P; Louie, Katherine B; Dorrestein, Pieter C; Wang, Mingxun

Learning molecular fingerprints of foods to decode dietary intake

学习食物的分子指纹以解码膳食摄入量

Dorrestein, Pieter; Gouda, Harsha; Agongo, Julius; Kelly, Patricia; Sala-Climent, Marta; Nunes, Wilhan Gonçalves; Gkikas, Konstantinos; Xing, Shipei; Deleray, Victoria; Wang, Crystal; Charron-Lamoureux, Vincent; Zhao, Haoqi Nina; Mohanty, Ipsita; McMaugh, Aubreyana; Sharma, Meera; Nguyen, An; Fleming, Jennifer; Wang, Mingxun; Rattray, Nicholas; Russell, Richard; Gerasimidis, Konstantinos; Guma, Monica