日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Computational Modeling of Cellular Influence Delineates Functionally Relevant and Distinct Cellular Neighborhoods in Primary and Metastatic Pancreatic Ductal Adenocarcinoma

细胞影响的计算模型描绘了原发性和转移性胰腺导管腺癌中功能相关且不同的细胞邻域

Cho, Yeonju; Lee, Jae W; Shin, Sarah M; Hernandez, Alexei G; Yuan, Xuan; Schneider, Jowaly; Hooper, Jody E; Wood, Laura D; Jaffee, Elizabeth M; Deshpande, Atul; Ho, Won Jin

Reconstructing biologically coherent cellular profiles from imaging-based spatial transcriptomics

从基于成像的空间转录组学重建生物学上连贯的细胞图谱

Yuan, Long; Zheng, Youyun; Zhang, Shuming; Beroukhim, Rameen; Deshpande, Atul

STAPLE: automating spatial transcriptomics analysis and AI interpretation

STAPLE:自动化空间转录组学分析和人工智能解读

Lvovs, Dmitrijs; Quinn, Jeffrey; Forjaz, André; Santana-Cruz, Ivette; Stapleton, Orian; Vavikolanu, Kranthi; Wetzel, Meredith; Bernard, Vincent; Herb, Brian R; Favorov, Alexander; Kagohara, Luciane T; Kiemen, Ashley L; Maitra, Anirban; Sidiropoulos, Dimitrios N; Tansey, Wesley; Wood, Laura D; Deshpande, Atul; Noble, Michael; Fertig, Elana J

Deep Learning Enabled 3D Multi-Omic Analysis Reveals Molecular Signatures of Heterogeneous Response to Chemotherapy in Pancreatic Cancer

深度学习赋能的三维多组学分析揭示胰腺癌化疗异质性反应的分子特征

Forjaz, André; Mojdeganlou, Hengameh; Valentin, Alens; Wetzel, Meredith; Lvovs, Dmitrijs; Deshpande, Atul; Shin, Sarah M; Piya, Sujan; Rajapakshe, Kimal I; Guerrero, Paola A; Pedro, Brian A; Sidiropoulos, Dimitrios N; Wu, Pei-Hsun; Pagan, Vincent Bernard; Wirtz, Denis; Fertig, Elana J; Kagohara, Luciane T; Ho, Won Jin; Kiemen, Ashley L; Wood, Laura D; Christenson, Eric S; Freed-Pastor, William A; Iacobuzio-Donahue, Christine A; Karchin, Rachel; Karnoub, Elias-Ramzey; Maitra, Anirban; Melchor, Jerry; Park, Wungki; Matos-Romero, Valentina; O'Reilly, Eileen; Soares, Kevin C

Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories

人类可理解的语法对多细胞系统生物学模型进行编码,以实现虚拟细胞实验室的普及化。

Johnson, Jeanette A I; Bergman, Daniel R; Rocha, Heber L; Zhou, David L; Cramer, Eric; Mclean, Ian C; Dance, Yoseph W; Booth, Max; Nicholas, Zachary; Lopez-Vidal, Tamara; Deshpande, Atul; Heiland, Randy; Bucher, Elmar; Shojaeian, Fatemeh; Dunworth, Matthew; Forjaz, André; Getz, Michael; Godet, Inês; Kurtoglu, Furkan; Lyman, Melissa; Metzcar, John; Mitchell, Jacob T; Raddatz, Andrew; Solorzano, Jacobo; Sundus, Aneequa; Wang, Yafei; DeNardo, David G; Ewald, Andrew J; Gilkes, Daniele M; Kagohara, Luciane T; Kiemen, Ashley L; Thompson, Elizabeth D; Wirtz, Denis; Wood, Laura D; Wu, Pei-Hsun; Zaidi, Neeha; Zheng, Lei; Zimmerman, Jacquelyn W; Phillip, Jude M; Jaffee, Elizabeth M; Gray, Joe W; Coussens, Lisa M; Chang, Young Hwan; Heiser, Laura M; Stein-O'Brien, Genevieve L; Fertig, Elana J; Macklin, Paul

Neoadjuvant Immunotherapy Promotes the Formation of Mature Tertiary Lymphoid Structures in a Remodeled Pancreatic Tumor Microenvironment

新辅助免疫疗法促进重塑的胰腺肿瘤微环境中成熟三级淋巴结构的形成

Sidiropoulos, Dimitrios N; Shin, Sarah M; Wetzel, Meredith; Girgis, Alexander A; Bergman, Daniel; Danilova, Ludmila; Perikala, Susheel; Shu, Daniel; Montagne, Janelle M; Deshpande, Atul; Leatherman, James; Dequiedt, Lucie; Jacobs, Victoria; Ogurtsova, Aleksandra; Mo, Guanglan; Yuan, Xuan; Lvovs, Dmitrijs; Stein-O'Brien, Genevieve; Yarchoan, Mark; Zhu, Qingfeng; Harper, Elizabeth I; Weeraratna, Ashani T; Kiemen, Ashley L; Jaffee, Elizabeth M; Zheng, Lei; Ho, Won Jin; Anders, Robert A; Fertig, Elana J; Kagohara, Luciane T

Spatial proteomics and transcriptomics reveal early immune cell organization in pancreatic intraepithelial neoplasia.

空间蛋白质组学和转录组学揭示了胰腺上皮内瘤变早期免疫细胞的组织结构

Lyman Melissa R, Mitchell Jacob T, Raghavan Sidharth, Kagohara Luciane T, Huff Amanda L, Haldar Saurav D, Shin Sarah M, Guinn Samantha, Barrett Benjamin, Longway Gabriella, Hernandez Alexei, Coyne Erin M, Yuan Xuan, Andaloori Lalitya, Lai Jiaying, Liu Yun Zhou, Karchin Rachel, Gupta Anuj, Kiemen Ashley L, Forjaz André, Wirtz Denis, Wu Pei-Hsun, Deshpande Atul, Lee Jae W, Armstrong Todd D, Azad Nilofer S, Zimmerman Jacquelyn W, Wood Laura D, Anders Robert A, Thompson Elizabeth D, Jaffee Elizabeth M, Fertig Elana J, Ho Won Jin, Zaidi Neeha

TMIC-70. Integrative spatiotemporal proteomic and metabolomic characterization of immune infiltration following intracranial injection of oncolytic immunotherapy in glioblastoma patients

TMIC-70. 胶质母细胞瘤患者颅内注射溶瘤免疫疗法后免疫浸润的整合时空蛋白质组学和代谢组学表征

Ma, Ruixue; Gong, Li; Dong, Chao; Utsumi, Teruo; Qi, Jiewen; Zhuang, Zhen W; Zhang, Xuchen; Yang, Yilin; McConnell, Matthew J; Huang, Hui-Chun; Iwakiri, Yasuko; Lee, Benjamin P; Lu, Yun; Gallegos, Carlos; Helman, Emily; Lynch, Shannon E; Markert, James M; Sorace, Anna G; Michaelides, Loizos; Julian, Maddy; Gil, Beatriz Fernandez; Schiapparelli, Paula; Jones, Vanessa; Brooks, Mieu; Arnold, Susan; Tzeng, Stephany; Pluhar, Liz; Green, Jordan; Quinones-Hinojosa, Alfredo; Heugenhauser, J; Visus, C; Buchroithner, J; Marosi, C; Rössler, K; Felzmann, T; Widhalm, G; Nowosielski, M; Erhart, F; Tan, Jia Min; Wong, Jia Hui; Sandhu, Gurveen Kaur; Zailan, Fatin Zahra; Leonardo, Jacklyn; Sim, Xin Ying; Kandiah, Nagaendran; Barron, Anna M; Gantchev, Jennifer; Baquer, Gerard; Zheng, Peter; D’Souza, Alicia; Ling, Alexander; Regan, Michael; TeamLab, G B M; Deshpande, Atul; White, Forest; Yu, Kenny; Chiocca, E Antonio; Couturier, Charles; Agar, Nathalie

Periductal Fibroblast Density Defines Lymphocyte Exclusion via a CD44-Dependent Stromal Checkpoint in Pancreatic Cancer

胰腺癌中导管周围成纤维细胞密度通过 CD44 依赖性基质检查点决定淋巴细胞的排除

Malchiodi, Zoe X; Lekan, Alexander A; Suter, Robert K; Deshpande, Atul; Peran, Ivana; Harris, Brent T; Duttargi, Anju; Chien, Min-Ju; Hariharan, Samika; Wetherill, Lucia; Arslan, Selime; Jablonski, Sandra A; Ho, Won Jin; Afifi, Marwa; Fertig, Elana J; Weiner, Louis M

Quantitative Calibration of a Spatial QSP Model Identifies Fibroblast Impact on HCC Immunotherapy

空间QSP模型的定量校准揭示成纤维细胞对肝细胞癌免疫治疗的影响

Zhang, Shuming; Wang, Hanwen; Cho, Yeonju; Wong, Wendy; Yarchoan, Mark; Jaffee, Elizabeth M; Ho, Won Jin; Kagohara, Luciane T; Fertig, Elana J; Popel, Aleksander S; Deshpande, Atul