日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies

在共享和格式化组学研究相关的元数据方面存在的认知和技术障碍

Huang, Yu-Ning; Munteanu, Viorel; Love, Michael I; Ronkowski, Cynthia Flaire; Deshpande, Dhrithi; Wong-Beringer, Annie; Corbett-Detig, Russell; Dimian, Mihai; Moore, Jason H; Garmire, Lana X; Reddy, T B K; Butte, Atul J; Robinson, Mark D; Eskin, Eleazar; Abedalthagafi, Malak S; Mangul, Serghei

Assessing genomic reproducibility of read alignment tools

评估读取比对工具的基因组可重复性

Baykal, Pelin Icer; Simonov, Mike; Deshpande, Dhrithi; Korukoglu, Ful Belin; Moore, Jaden; Chhugani, Karishma; Liu, Cecilia; Sarwal, Varuni; Rajkumar, Neha; Alser, Mohammed; Beerenwinkel, Niko; Mangul, Serghei

Robust software development practices improve citations of RNA-seq tools

稳健的软件开发实践可以提高RNA测序工具的引用率。

Sharma, Sanskruti; Ilgun, Ecem; Okcu, Tuna; Ostash, Vladyslav; Bashynska, Vitalina; Alkan, Can; Myoung, Elisha; Alpana, Naznin Nahar; Chhugani, Karishma; Deshpande, Dhrithi; Bui, Alex A T; Ellrott, Kyle; Burduniuc, Olga; Tatarinova, Tatiana V; Munteanu, Viorel; Labaj, Pawel P; Ciorba, Dumitru; Bostan, Viorel; Dimian, Mihai; Pellegrini, Matteo; Alser, Mohammed; Mangul, Serghei

A machine-learning framework to characterize functional disease architectures and prioritize disease variants

用于表征功能性疾病结构并确定疾病变异优先级的机器学习框架

Cheng, Siliangyu; Kim, Artem; Deshpande, Dhrithi; Gazal, Steven

The evolution of computational research in a data-centric world

以数据为中心的世界中计算研究的演变

Deshpande, Dhrithi; Chhugani, Karishma; Ramesh, Tejasvene; Pellegrini, Matteo; Shifman, Sagiv; Abedalthagafi, Malak S; Alqahtani, Saleh; Ye, Jimmie; Liu, Xiaole Shirley; Leek, Jeffrey T; Brazma, Alvis; Ophoff, Roel A; Rao, Gauri; Butte, Atul J; Moore, Jason H; Katritch, Vsevolod; Mangul, Serghei

Analytical code sharing practices in biomedical research

生物医学研究中的分析代码共享实践

Sharma, Nitesh Kumar; Ayyala, Ram; Deshpande, Dhrithi; Patel, Yesha; Munteanu, Viorel; Ciorba, Dumitru; Bostan, Viorel; Fiscutean, Andrada; Vahed, Mohammad; Sarkar, Aditya; Guo, Ruiwei; Moore, Andrew; Darci-Maher, Nicholas; Nogoy, Nicole; Abedalthagafi, Malak; Mangul, Serghei

Whole blood transcriptomics identifies subclasses of pediatric septic shock.

全血转录组学鉴定出儿童脓毒性休克的亚型

Yang Jamie O, Zinter Matt S, Pellegrini Matteo, Wong Man Yee, Gala Kinisha, Markovic Daniela, Nadel Brian, Peng Kerui, Do Nguyen, Mangul Serghei, Nadkarni Vinay M, Karlsberg Aaron, Deshpande Dhrithi, Butte Manish J, Asaro Lisa, Agus Michael, Sapru Anil

RNA-seq data science: From raw data to effective interpretation

RNA-seq 数据科学:从原始数据到有效解读

Deshpande, Dhrithi; Chhugani, Karishma; Chang, Yutong; Karlsberg, Aaron; Loeffler, Caitlin; Zhang, Jinyang; Muszyńska, Agata; Munteanu, Viorel; Yang, Harry; Rotman, Jeremy; Tao, Laura; Balliu, Brunilda; Tseng, Elizabeth; Eskin, Eleazar; Zhao, Fangqing; Mohammadi, Pejman; P Łabaj, Paweł; Mangul, Serghei

Unlocking capacities of genomics for the COVID-19 response and future pandemics

释放基因组学在应对新冠肺炎疫情和未来大流行病中的作用

Knyazev, Sergey; Chhugani, Karishma; Sarwal, Varuni; Ayyala, Ram; Singh, Harman; Karthikeyan, Smruthi; Deshpande, Dhrithi; Baykal, Pelin Icer; Comarova, Zoia; Lu, Angela; Porozov, Yuri; Vasylyeva, Tetyana I; Wertheim, Joel O; Tierney, Braden T; Chiu, Charles Y; Sun, Ren; Wu, Aiping; Abedalthagafi, Malak S; Pak, Victoria M; Nagaraj, Shivashankar H; Smith, Adam L; Skums, Pavel; Pasaniuc, Bogdan; Komissarov, Andrey; Mason, Christopher E; Bortz, Eric; Lemey, Philippe; Kondrashov, Fyodor; Beerenwinkel, Niko; Lam, Tommy Tsan-Yuk; Wu, Nicholas C; Zelikovsky, Alex; Knight, Rob; Crandall, Keith A; Mangul, Serghei

Technology dictates algorithms: recent developments in read alignment

技术决定算法:读取比对的最新进展

Alser, Mohammed; Rotman, Jeremy; Deshpande, Dhrithi; Taraszka, Kodi; Shi, Huwenbo; Baykal, Pelin Icer; Yang, Harry Taegyun; Xue, Victor; Knyazev, Sergey; Singer, Benjamin D; Balliu, Brunilda; Koslicki, David; Skums, Pavel; Zelikovsky, Alex; Alkan, Can; Mutlu, Onur; Mangul, Serghei